$ GenomeThreader 0.9.32 (2005-04-19 10:59:24) $ Date run: 2005-04-19 11:01:55 $ Splice Site Model: Bayesian $ $ genomicfile = "hs_ref_chr21.gbk" $ referencefile = "NM_003253.gbk" $ species = "human" $ proteinsmap = "protein" $ scorematrix = "BLOSUM62" $ bssmfile = "human" $ searchmode = (forward=True,reverse=True) $ frompos = 0 (default) $ topos = 0 (default) $ width = 0 (default) $ verbose = False (default) $ gs2out = False (default) $ showintronmaxlen = 120 (default) maximum length of a fully shown intron $ minorflen = 64 (default) minimum length of an ORF to be shown $ minmatchlen = 20 (default) minimum match length $ seedlength = 18 (default) the seed length $ exdrop = 2 (default) the xdrop value for edit distance $ online = False (default) run the similarity filter online $ inverse = False (default) invert query and index in vmatch call $ exact = False (default) use exact matches $ noautoindex = False (default) do not create indices automatically $ maskpolyatails = False (default) mask poly(A) tails in cDNA/EST files $ maxnumofmatches = 0 (default) maximum number of matches $ matchnumdistri = False (default) show the distribution of matches $ chainlocal = 1 (default) local chains (according to L1-model). $ uselocalchaining = False (default) enable local chaining $ chainwf = 0.500000 (default) weight factor > 0.0 for local chaining $ gcmaxgapwidth = 1000000 (default) maximum gap width for global chains $ gcfilterthreshold= 50 (default) threshold for filter of global chains $ introncutout = True (non-df.) enable the intron cutout technique $ autointroncutout = 0 (default) automatic intron cutout matrix size $ icinitialdelta = 50 (default) initial delta used for intron cutouts $ iciterations = 2 (default) number of intron cutout iterations $ icdeltaincrease = 50 (default) delta increase during every iteration $ icminremintronlen= 10 (default) minimum remaining intron length $ probies = 0.500000 (default) initial exon state probability $ probdelgen = 0.030000 (default) genomic sequence deletion probability $ identityweight = 2.000000 (default) pairs of identical characters weight $ mismatchweight = -2.000000 (default) weight for mismatching characters $ undetcharweight = 0.000000 (default) weight for undetermined characters $ deletionweight = -4.000000 (default) weight for deletions $ dpminexonlen = 5 (default) minimum exon length for the DP $ dpminintronlen = 50 (default) minimum intron length for the DP $ shortexonpenal = 100 (default) short exon penalty $ shortintronpenal = 100 (default) short intron penalty $ wzerotransition = 80 (default) zero transition weights window size $ wdecreasedoutput = 80 (default) decreased output weights window size $ leadcutoffsmode = RELAXED (default) cutoffs mode for leading bases $ termcutoffsmode = STRICT (default) cutoffs mode for terminal bases $ cutoffsminexonlen= 5 (default) cutoffs minimum exon length $ scoreminexonlen = 50 (default) score minimum exon length $ minaveragessp = 0.500000 (default) minimum average splice site prob. $ intermediate = False (default) stop after calc. of spliced alignments $ sortags = False (default) sort alternative gene structures $ sortagswf = 1.000000 (default) weight factor for the sorting of AGSs $ first = 0 (default) maximum number of spliced alignments $ $ special output characters for starting lines: $ GTHINFOCHAR = $ (info line) $ VMATCHCHAR = # (mkvtree and vmatch output) $ ******************************************************************************** EST Sequence: file=NM_003253.gbk, strand=+, description=NM_003253 Homo sapiens T-cell lymphoma invasion and metastasis 1 (TIAM1), 1 CGCCCCGCAT CGTGCCCGGC CCCGTCGCGG AGATCCCGGA CGACCGTCGC GGGTTGATGG 61 TCGCATTCCA GATGTAAACA GCTTCAGAAG CCTGACGGTC ATATGGTAGA ATCACTGTGG 121 ACTGAGACCC ACCTTTCTAG ACCTGAAGCC CAGGAGGAGG AAGAGGAGGC TGGTTGGTAC 181 CATGGGCATA ATGCTCTGAA TCCTAGTCTC TCACCTAGTA TGTGAGCAGT CCCTGCAGAT 241 GGCCCATTTG GAGATCTTGA CAAAGCCTCT TCTGTTTCCA ATGGGGTTTT TGGCGCATTC 301 TCACAGACTT AGATGAAACT GTGATGGCCA CCGCAGGGGG CAGGTGCTGA CATCGTCCCC 361 AGCCCTGTGG CTGTTCATCC GGACATCATT TCCAACCTCA ATATCTAAAT GCCACAGTGC 421 TCTTGGAGCA AGTTGGGCTG GGGACCACTG TTGCCTTTTA AGACCATAAA ACCATGGGAA 481 ACGCAGAAAG TCAACATGTA GAGCACGAGT TTTATGGAGA AAAGCATGCC AGCCTGGGGC 541 GCAACGACAC TTCCCGCTCC CTGCGCCTCT CGCACAAGAC GCGGAGGACC AGGCACGCTT 601 CCTCGGGGAA GGTGATCCAC AGGAACTCCG AAGTGAGCAC CCGATCCAGC AGCACCCCCA 661 GCATCCCCCA GTCCCTGGCT GAAAATGGCC TGGAGCCCTT CTCCCAAGAT GGTACCCTAG 721 AAGACTTCGG GAGCCCCATC TGGGTGGACC GAGTGGACAT GGGCTTGAGA CCTGTGTCTT 781 ACACTGACTC TTCTGTCACT CCCAGCGTAG ACAGCAGCAT CGTCCTCACA GCAGCCTCTG 841 TGCAGAGCAT GCCAGACACT GAGGAGAGCA GGCTTTACGG GGATGACGCT ACATATTTGG 901 CTGAGGGAGG CAGGAGGCAG CATTCCTATA CATCCAATGG GCCCACTTTC ATGGAGACGG 961 CGAGCTTTAA GAAGAAACGC TCCAAATCTG CAGACATCTG GCGGGAGGAC AGCCTGGAAT 1021 TCTCACTCTC TGATCTGAGC CAAGAACATT TAACAAGCAA CGAAGAAATC TTGGGTTCCG 1081 CCGAAGAGAA GGACTGCGAG GAGGCTCGGG GGATGGAAAC GCGGGCGAGT CCGCGGCAGC 1141 TCAGCACCTG TCAGAGAGCC AATTCCTTGG GTGACTTGTA TGCTCAGAAA AACTCTGGAG 1201 TGACAGCAAA CATGGGGCCG GGGAGCAAAT TTGCAGGCTA CTGTCGGAAT TTGGTGTCTG 1261 ATATTCCCAA TCTTGCAAAC CATAAGATGC CACCAGCTGC TGCTGAAGAG ACTCCTCCGT 1321 ACAGTAATTA TAACACACTT CCCTGTAGGA AATCTCACTG TCTCTCTGAA GGTGCCACCA 1381 ACCCACAAAT TAGCCATAGC AACAGCATGC AAGGCAGAAG AGCTAAAACA ACTCAGGATG 1441 TTAATGCAGG CGAGGGCAGT GAGTTTGCAG ACAGTGGGAT TGAAGGGGCC ACTACCGACA 1501 CGGACCTCCT GTCCAGGCGA TCTAATGCCA CCAACTCCAG CTACTCACCC ACCACAGGCC 1561 GGGCCTTTGT GGGCAGCGAC AGCGGCAGCA GCTCCACCGG GGATGCGGCT CGTCAGGGGG 1621 TGTACGAGAA CTTCCGGCGG GAGCTGGAGA TGAGCACCAC CAACAGCGAG AGCCTGGAGG 1681 AGGCCGGCTC TGCGCACAGC GATGAGCAGA GCAGCGGCAC CCTGAGCTCT CCGGGCCAGT 1741 CGGACATCCT GCTGACCGCC GCACAGGGCA CGGTGCGCAA GGCCGGCGCC CTGGCCGTCA 1801 AGAACTTCCT GGTGCACAAG AAGAACAAGA AGGTGGAGTC AGCCACCCGG AGGAAGTGGA 1861 AGCACTACTG GGTGTCCCTG AAAGGATGCA CGCTATTTTT CTACGAGAGC GACGGCAGGT 1921 CTGGGATAGA CCACAACAGC ATCCCCAAAC ACGCCGTCTG GGTGGAGAAC AGCATTGTGC 1981 AGGCTGTGCC TGAGCACCCC AAGAAGGACT TTGTCTTCTG CCTCAGCAAT TCCCTGGGTG 2041 ATGCCTTCCT TTTTCAGACC ACTAGCCAGA CGGAGCTTGA AAACTGGATC ACCGCCATCC 2101 ACTCTGCCTG CGCCACTGCG GTCGCGAGGC ACCACCACAA GGAAGACACG CTCCGACTCC 2161 TGAAATCAGA GATCAAAAAA CTGGAACAGA AGATTGACAT GGATGAAAAG ATGAAGAAAA 2221 TGGGTGAAAT GCAGCTGTCT TCAGTCACTG ACTCAAAGAA AAAGAAAACA ATATTAGATC 2281 AGATCTTTGT CTGGGAGCAA AATCTCGAGC AGTTCCAAAT GGACCTGTTT CGTTTCCGCT 2341 GTTATTTAGC CAGCCTTCAG GGTGGGGAGC TGCCAAACCC CAAAAGGCTT CTCGCTTTTG 2401 CAAGTCGACC AACGAAAGTG GCCATGGGCC GCCTTGGAAT CTTTTCGGTA TCATCGTTTC 2461 ATGCCCTGGT GGCAGCACGC ACTGGTGAAA CTGGAGTGAG AAGACGTACT CAGGCCATGT 2521 CCAGATCCGC GAGCAAGCGA AGGAGCAGGT TTTCTTCTCT GTGGGGTCTG GATACTACCT 2581 CCAAAAAGAA GCAGGGACGG CCAAGCATCA ATCAGGTGTT TGGAGAGGGA ACCGAAGCTG 2641 TAAAGAAATC TTTAGAGGGA ATATTTGATG ACATTGTTCC AGATGGCAAG AGGGAGAAAG 2701 AAGTGGTCTT ACCTAACGTT CACCAGCACA ACCCTGACTG CGACATTTGG GTCCACGAGT 2761 ATTTCACTCC ATCCTGGTTC TGTCTGCCCA ATAATCAGCC TGCCCTGACG GTCGTCCGGC 2821 CAGGCGACAC TGCACGGGAC ACCCTGGAGC TGATTTGCAA GACACATCAA CTGGATCATT 2881 CTGCTCATTA CCTGCGCCTG AAATTTCTAA TAGAAAACAA AATGCAGCTC TATGTTCCAC 2941 AGCCCGAGGA AGACATCTAT GAGCTGCTGT ACAAAGAAAT TGAAATCTGT CCAAAAGTCA 3001 CTCACAGCAT CCACATTGAG AAGTCAGATA CAGCTGCTGA TACTTACGGG TTTTCACTTT 3061 CTTCTGTGGA AGAAGATGGT ATTCGAAGGC TGTACGTGAA TAGTGTGAAG GAAACCGGTT 3121 TAGCTTCCAA GAAAGGCCTG AAAGCAGGAG ATGAGATTCT TGAGATCAAT AATCGTGCTG 3181 CTGACGCCCT GAACTCTTCT ATGCTCAAAG ATTTCCTCTC ACAACCCTCG CTGGGCCTCC 3241 TGGTGAGGAC CTACCCCGAG CTGGAGGAAG GAGTGGAGCT GCTGGAAAGC CCGCCCCACC 3301 GAGTGGACGG CCCTGCCGAC CTTGACGAGA GCCCCCTCGC CTTTCTCACC AGCAACCCAG 3361 GGCACAGCCT TTGCAGCGAG CAGGGCAGCA GTGCTGAGAC CGCTCCAGAG GAGACCGAGG 3421 GGCCAGACTT GGAATCCTCA GATGAGACTG ATCACAGCAG CAAGAGTACA GAACAGGTGG 3481 CCGCATTTTG CCGCAGTTTG CATGAGATGA ACCCCTCTGA CCAGAACCCA TCTCCTCAGG 3541 ACTCCACGGG GCCTCAGCTG GCGACCATGA GACAACTCTC GGATGCAGAT AACGTGCGCA 3601 AGGTGATCTG CGAGCTCCTG GAGACGGAGC GCACCTACGT GAAGGATTTA AACTGTCTTA 3661 TGGAGAGATA CCTAAAGCCT CTTCAAAAAG AAACTTTTCT CACCCAGGAT GAGCTTGACG 3721 TGCTTTTTGG AAATTTAACG GAAATGGTAG AGTTTCAAGT AGAATTCCTT AAAACTCTAG 3781 AAGATGGAGT GAGACTGGTA CCTGATTTGG AAAAGCTTGA GAAGGTTGAT CAATTTAAGA 3841 AAGTGCTGTT CTCTCTGGGG GGATCATTCC TGTATTATGC TGACCGCTTC AAGCTCTACA 3901 GTGCCTTCTG CGCCATCCAC ACAAAAGTTC CCAAGGTCCT GGTGAAAGCC AAGACAGACA 3961 CGGCTTTCAA GGCATTCTTG GATGCCCAGA ACCCGAAGCA GCAGCACTCA TCCACGCTGG 4021 AGTCGTACCT CATCAAGCCC ATCCAGAGGA TCCTCAAGTA CCCACTTCTG CTCAGGGAGC 4081 TGTTCGCCCT GACCGATGCG GAGAGCGAGG AGCACTACCA CCTGGACGTG GCCATCAAGA 4141 CCATGAACAA GGTTGCCAGT CACATCAATG AGATGCAGAA AATCCATGAA GAGTTTGGGG 4201 CTGTGTTTGA CCAGCTGATT GCTGAACAGA CTGGTGAGAA AAAAGAGGTT GCAGATCTGA 4261 GCATGGGAGA CCTGCTTTTG CACACTACCG TGATCTGGCT GAACCCGCCG GCCTCGCTGG 4321 GCAAGTGGAA AAAGGAACCA GAGTTGGCAG CATTCGTCTT CAAAACTGCT GTGGTCCTTG 4381 TGTATAAAGA TGGTTCCAAA CAGAAGAAGA AACTTGTAGG ATCTCACAGG CTTTCCATTT 4441 ATGAGGACTG GGACCCCTTC AGATTTCGAC ACATGATCCC CACGGAAGCG CTGCAGGTTC 4501 GAGCTTTGGC GAGTGCAGAT GCAGAGGCAA ATGCCGTGTG TGAAATTGTC CATGTAAAAT 4561 CCGAGTCTGA AGGGAGGCCG GAGAGGGTCT TTCACTTGTG CTGCAGCTCC CCAGAGAGCC 4621 GAAAGGATTT CCTAAAGGCT GTGCATTCAA TCCTGCGTGA TAAGCACAGA AGACAGCTCC 4681 TCAAAACCGA GAGCCTTCCC TCATCCCAGC AATATGTCCC TTTTGGAGGC AAAAGATTGT 4741 GTGCACTGAA GGGGGCCAGG CCGGCCATGA GCAGGGCAGT GTCTGCCCCA AGCAAGTCTC 4801 TTGGGAGGAG GAGGCGGCGG CTGGCTCGAA ACAGGTTTAC CATTGATTCT GATGCCGTCT 4861 CCGCAAGCAG CCCGGAGAAA GAGTCCCAGC AGCCCCCCGG TGGTGGGGAC ACTGACCGAT 4921 GGGTAGAGGA GCAGTTTGAT CTTGCTCAGT ATGAGGAGCA AGATGACATC AAGGAGACAG 4981 ACATCCTCAG TGACGATGAT GAGTTCTGTG AGTCCGTGAA GGGTGCCTCA GTGGACAGAG 5041 ACCTGCAGGA GCGGCTTCAG GCCACCTCCA TCAGTCAGCG GGAAAGAGGC CGGAAAACCC 5101 TGGATAGTCA CGCGTCCCGC ATGGCACAGC TCAAGAAGCA AGCTGCCCTG TCGGGGATCA 5161 ATGGAGGCCT GGAGAGCGCA AGCGAGGAAG TCATTTGGGT TAGGCGTGAA GACTTTGCCC 5221 CCTCCAGGAA ACTGAACACT GAGATCTGAC TGCGTCACCT GCCCCGTAGA GAATGTGTGT 5281 AGATACTTCC TGCCCTAACT CTGCCCACCC TCCTGTACCG TCGACAAGAA TGTCCCCTTA 5341 GGTCGCGCTC TTGCACACAC GGTTTTGGCA GCTGACTTGG TTCTGAAGCC ATGTAGCCAC 5401 CCAACTTTGT CATTTTCAAC AACATCAGAA AGAATTGATC AGAATCCCAA ATAAAACCCA 5461 AAAGTGTCTA ATGTATTCAT TCATTAGCTA ACTAAAAGCC CAAAAAAGAC AAGACACCCA 5521 G Genomic Template: file=hs_ref_chr21.gbk, strand=-, from=18593461, to=18154052, description=NT_011512 Homo sapiens chromosome 21 genomic contig. Predicted gene structure: Exon 1 18593162 18593111 ( 52 n); cDNA 1 52 ( 52 n); score: 0.981 Intron 1 18593110 18498220 (94891 n); Pd: 0.992 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 18498219 18498167 ( 53 n); cDNA 53 105 ( 53 n); score: 1.000 Intron 2 18498166 18373609 (124558 n); Pd: 0.700 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 18373608 18373429 ( 180 n); cDNA 106 285 ( 180 n); score: 1.000 Intron 3 18373428 18311096 (62333 n); Pd: 0.986 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 18311095 18310919 ( 177 n); cDNA 286 462 ( 177 n); score: 1.000 Intron 4 18310918 18301171 (9748 n); Pd: 0.981 (s: 1.00), Pa: 0.931 (s: 1.00) Exon 5 18301170 18300197 ( 974 n); cDNA 463 1436 ( 974 n); score: 0.996 Intron 5 18300196 18286377 (13820 n); Pd: 0.984 (s: 1.00), Pa: 0.979 (s: 1.00) Exon 6 18286376 18285929 ( 448 n); cDNA 1437 1884 ( 448 n); score: 0.998 Intron 6 18285928 18279848 (6081 n); Pd: 0.983 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 7 18279847 18279675 ( 173 n); cDNA 1885 2057 ( 173 n); score: 0.994 Intron 7 18279674 18260138 (19537 n); Pd: 0.780 (s: 1.00), Pa: 0.988 (s: 1.00) Exon 8 18260137 18259913 ( 225 n); cDNA 2058 2282 ( 225 n); score: 1.000 Intron 8 18259912 18257779 (2134 n); Pd: 0.917 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 9 18257778 18257593 ( 186 n); cDNA 2283 2468 ( 186 n); score: 1.000 Intron 9 18257592 18251887 (5706 n); Pd: 0.939 (s: 1.00), Pa: 0.992 (s: 1.00) Exon 10 18251886 18251740 ( 147 n); cDNA 2469 2615 ( 147 n); score: 1.000 Intron 10 18251739 18247660 (4080 n); Pd: 0.959 (s: 1.00), Pa: 0.891 (s: 1.00) Exon 11 18247659 18247585 ( 75 n); cDNA 2616 2690 ( 75 n); score: 1.000 Intron 11 18247584 18244403 (3182 n); Pd: 0.842 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 12 18244402 18244232 ( 171 n); cDNA 2691 2861 ( 171 n); score: 1.000 Intron 12 18244231 18237200 (7032 n); Pd: 0.967 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 13 18237199 18237095 ( 105 n); cDNA 2862 2966 ( 105 n); score: 1.000 Intron 13 18237094 18229493 (7602 n); Pd: 0.282 (s: 1.00), Pa: 0.994 (s: 0.98) Exon 14 18229492 18229411 ( 82 n); cDNA 2967 3048 ( 82 n); score: 0.988 Intron 14 18229410 18221275 (8136 n); Pd: 0.999 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 15 18221274 18221188 ( 87 n); cDNA 3049 3135 ( 87 n); score: 1.000 Intron 15 18221187 18216834 (4354 n); Pd: 0.989 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 16 18216833 18216609 ( 225 n); cDNA 3136 3360 ( 225 n); score: 0.991 Intron 16 18216608 18199254 (17355 n); Pd: 0.935 (s: 0.98), Pa: 0.910 (s: 1.00) Exon 17 18199253 18199150 ( 104 n); cDNA 3361 3464 ( 104 n); score: 1.000 Intron 17 18199149 18188616 (10534 n); Pd: 0.994 (s: 1.00), Pa: 0.786 (s: 1.00) Exon 18 18188615 18188436 ( 180 n); cDNA 3465 3644 ( 180 n); score: 0.983 Intron 18 18188435 18187324 (1112 n); Pd: 0.997 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 19 18187323 18187255 ( 69 n); cDNA 3645 3713 ( 69 n); score: 1.000 Intron 19 18187254 18186951 ( 304 n); Pd: 0.793 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 20 18186950 18186825 ( 126 n); cDNA 3714 3839 ( 126 n); score: 1.000 Intron 20 18186824 18181193 (5632 n); Pd: 0.879 (s: 1.00), Pa: 0.865 (s: 1.00) Exon 21 18181192 18181084 ( 109 n); cDNA 3840 3948 ( 109 n); score: 0.991 Intron 21 18181083 18175694 (5390 n); Pd: 0.999 (s: 0.98), Pa: 0.157 (s: 1.00) Exon 22 18175693 18175514 ( 180 n); cDNA 3949 4128 ( 180 n); score: 1.000 Intron 22 18175513 18175426 ( 88 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 23 18175425 18175307 ( 119 n); cDNA 4129 4247 ( 119 n); score: 1.000 Intron 23 18175306 18170231 (5076 n); Pd: 0.967 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 24 18170230 18170122 ( 109 n); cDNA 4248 4356 ( 109 n); score: 1.000 Intron 24 18170121 18165138 (4984 n); Pd: 0.882 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 25 18165137 18165079 ( 59 n); cDNA 4357 4415 ( 59 n); score: 1.000 Intron 25 18165078 18164505 ( 574 n); Pd: 0.790 (s: 1.00), Pa: 0.902 (s: 1.00) Exon 26 18164504 18164402 ( 103 n); cDNA 4416 4518 ( 103 n); score: 1.000 Intron 26 18164401 18161342 (3060 n); Pd: 0.757 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 27 18161341 18161254 ( 88 n); cDNA 4519 4606 ( 88 n); score: 1.000 Intron 27 18161253 18158884 (2370 n); Pd: 0.971 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 28 18158883 18158711 ( 173 n); cDNA 4607 4779 ( 173 n); score: 1.000 Intron 28 18158710 18155027 (3684 n); Pd: 0.742 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 29 18155026 18154352 ( 675 n); cDNA 4780 5454 ( 675 n); score: 1.000 MATCH NT_011512- NM_003253+ 0.997 5454 0.988 C PGS_NT_011512-_NM_003253+ (18593162 18593111,18498219 18498167,18373608 18373429,18311095 18310919,18301170 18300197,18286376 18285929,18279847 18279675,18260137 18259913,18257778 18257593,18251886 18251740,18247659 18247585,18244402 18244232,18237199 18237095,18229492 18229411,18221274 18221188,18216833 18216609,18199253 18199150,18188615 18188436,18187323 18187255,18186950 18186825,18181192 18181084,18175693 18175514,18175425 18175307,18170230 18170122,18165137 18165079,18164504 18164402,18161341 18161254,18158883 18158711,18155026 18154352) Alignment (genomic DNA sequence = upper lines): TGCCCCGCAT CGTGCCCGGC CCCGTCGCGG AGATCCCGGA CGACCGTCGC GGGTGAGTAC 18593103 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CGCCCCGCAT CGTGCCCGGC CCCGTCGCGG AGATCCCGGA CGACCGTCGC GG........ 52 CGCGGGCCTG GGGTGCGCGG GCGTCCGGCC GGAGCCGCCC CGGGAGACGG CGGCGAGGAT 18593043 ........... .......... .......... .......... .......... .......... 52 // intron part 18593042 18498303 (94740 n) not shown // //........ .......... .......... .......... .......... ........// CTGTGGAATA AAATGGATGG GCTTTGTGGA AGCTGTTTGT CACTCAGAAG TTTTTTTGTT 18498243 ........... .......... .......... .......... .......... .......... 52 TGTTTGTTTT TCTTACCTTC CAGGTTGATG GTCGCATTCC AGATGTAAAC AGCTTCAGAA 18498183 ||||||| |||||||||| |||||||||| |||||||||| ........... .......... ...GTTGATG GTCGCATTCC AGATGTAAAC AGCTTCAGAA 89 GCCTGACGGT CATATGGTGA GCAGTTTACA CTTTCATATA CGCCCTGTCA TGTGCTTTGA 18498123 |||||||||| |||||| GCCTGACGGT CATATG.... .......... .......... .......... .......... 105 AGGACTTTCT AGGGGCATCA AGGGTATGTG AATAAATTTG CTTTTTCACT TATTTGTCTA 18498063 ........... .......... .......... .......... .......... .......... 105 // intron part 18498062 18373683 (124380 n) not shown // //........ .......... .......... .......... .......... ........// GATAATCTTG CAATCTCTAG AGGTATGTAA AAACGAAGCA CAAAACCCAT TATTTTCTTA 18373623 ........... .......... .......... .......... .......... .......... 105 TGTTGCTCTT ATAGGTAGAA TCACTGTGGA CTGAGACCCA CCTTTCTAGA CCTGAAGCCC 18373563 |||||| |||||||||| |||||||||| |||||||||| |||||||||| ........... ....GTAGAA TCACTGTGGA CTGAGACCCA CCTTTCTAGA CCTGAAGCCC 151 AGGAGGAGGA AGAGGAGGCT GGTTGGTACC ATGGGCATAA TGCTCTGAAT CCTAGTCTCT 18373503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGGAGGA AGAGGAGGCT GGTTGGTACC ATGGGCATAA TGCTCTGAAT CCTAGTCTCT 211 CACCTAGTAT GTGAGCAGTC CCTGCAGATG GCCCATTTGG AGATCTTGAC AAAGCCTCTT 18373443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCTAGTAT GTGAGCAGTC CCTGCAGATG GCCCATTTGG AGATCTTGAC AAAGCCTCTT 271 CTGTTTCCAA TGGGGTAAGT GTGGCGTTTG CAAAAGGCTG GGGAATGAGG ATTGAAGCTT 18373383 |||||||||| |||| CTGTTTCCAA TGGG...... .......... .......... .......... .......... 285 TTAAAGTCTT TATTATCTTG ATCCTGCCCA AATCCACCTT TTTTGGGACA ATAGAAAGTT 18373323 ........... .......... .......... .......... .......... .......... 285 // intron part 18373322 18311163 (62160 n) not shown // //........ .......... .......... .......... .......... ........// ATTTCCTTCC TTCTGCCTCA TCCTTTTCTT TCTGTTTTTC TATCTCCTCT GACCTGCTCC 18311103 ........... .......... .......... .......... .......... .......... 285 TCTCCAGGTT TTTGGCGCAT TCTCACAGAC TTAGATGAAA CTGTGATGGC CACCGCAGGG 18311043 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GTT TTTGGCGCAT TCTCACAGAC TTAGATGAAA CTGTGATGGC CACCGCAGGG 338 GGCAGGTGCT GACATCGTCC CCAGCCCTGT GGCTGTTCAT CCGGACATCA TTTCCAACCT 18310983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAGGTGCT GACATCGTCC CCAGCCCTGT GGCTGTTCAT CCGGACATCA TTTCCAACCT 398 CAATATCTAA ATGCCACAGT GCTCTTGGAG CAAGTTGGGC TGGGGACCAC TGTTGCCTTT 18310923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCTAA ATGCCACAGT GCTCTTGGAG CAAGTTGGGC TGGGGACCAC TGTTGCCTTT 458 TAAGGTAGGT TTGCATATGT ATATTTGAGC CTATATGTTT GTATGAATTA ATGGAAATGC 18310863 |||| TAAG...... .......... .......... .......... .......... .......... 462 TTCAAAGGTG GTGGGACAGA TACGTTTTAC TATCATTGTT GTGTGTAGCT CGTGGGAAAA 18310803 ........... .......... .......... .......... .......... .......... 462 // intron part 18310802 18301263 (9540 n) not shown // //........ .......... .......... .......... .......... ........// TGCCCTCCCT GCAGGCTGAG CGCTTTCTCT AAGATGCCTA TACCTGTACT AATAGTGACT 18301203 ........... .......... .......... .......... .......... .......... 462 CAATTCTCCC CTTTCCCCCC GCTTTGCTGC AGACCATAAA ACCATGGGAA ACGCAGAAAG 18301143 |||||||| |||||||||| |||||||||| ........... .......... .......... ..ACCATAAA ACCATGGGAA ACGCAGAAAG 490 TCAACATGTA GAGCACGAGT TTTATGGAGA AAAGCATGCC AGCCTGGGGC GCAAGCACAC 18301083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| |||| TCAACATGTA GAGCACGAGT TTTATGGAGA AAAGCATGCC AGCCTGGGGC GCAACGACAC 550 TTCCCGCTCC CTGCGCCTCT CGCACAAGAC GCGGAGGACC AGGCACGCTT CCTCGGGGAA 18301023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCCGCTCC CTGCGCCTCT CGCACAAGAC GCGGAGGACC AGGCACGCTT CCTCGGGGAA 610 GGTGATCCAC AGGAACTCCG AAGTGAGCAC CCGATCCAGC AGCACCCCCA GCATCCCCCA 18300963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATCCAC AGGAACTCCG AAGTGAGCAC CCGATCCAGC AGCACCCCCA GCATCCCCCA 670 GTCCCTGGCT GAAAATGGCC TGGAGCCCTT CTCCCAAGAT GGTACCCTAG AAGACTTCGG 18300903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCCTGGCT GAAAATGGCC TGGAGCCCTT CTCCCAAGAT GGTACCCTAG AAGACTTCGG 730 GAGCCCCATC TGGGTGGACC GAGTGGACAT GGGCTTGAGA CCTGTGTCTT ACACTGACTC 18300843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCCCATC TGGGTGGACC GAGTGGACAT GGGCTTGAGA CCTGTGTCTT ACACTGACTC 790 TTCTGTCACT CCCAGCGTAG ACAGCAGCAT CGTCCTCACA GCAGCCTCTG TGCAGAGCAT 18300783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTCACT CCCAGCGTAG ACAGCAGCAT CGTCCTCACA GCAGCCTCTG TGCAGAGCAT 850 GCCAGACACT GAGGAGAGCA GGCTTTACGG GGATGACGCT ACATATTTGG CTGAGGGAGG 18300723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAGACACT GAGGAGAGCA GGCTTTACGG GGATGACGCT ACATATTTGG CTGAGGGAGG 910 CAGGAGGCAG CATTCCTATA CATCCAATGG GCCCACTTTC ATGGAGACGG CGAGCTTTAA 18300663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGAGGCAG CATTCCTATA CATCCAATGG GCCCACTTTC ATGGAGACGG CGAGCTTTAA 970 GAAGAAACGC TCCAAATCTG CAGACATCTG GCGGGAGGAC AGCCTGGAAT TCTCACTCTC 18300603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAACGC TCCAAATCTG CAGACATCTG GCGGGAGGAC AGCCTGGAAT TCTCACTCTC 1030 TGATCTGAGC CAAGAACATT TAACAAGCAA CGAAGAAATC TTGGGTTCCG CCGAAGAGAA 18300543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCTGAGC CAAGAACATT TAACAAGCAA CGAAGAAATC TTGGGTTCCG CCGAAGAGAA 1090 GGACTGCGAG GAGGCTCGGG GGATGGAAAC GCGGGCGAGT CCGCGGCAGC TCAGCACCTG 18300483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACTGCGAG GAGGCTCGGG GGATGGAAAC GCGGGCGAGT CCGCGGCAGC TCAGCACCTG 1150 TCAGAGAGCC AATTCCTTGG GTGACTTGTA TGCTCAGAAA AACTCTGGAG TGACAGCAAA 18300423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGAGAGCC AATTCCTTGG GTGACTTGTA TGCTCAGAAA AACTCTGGAG TGACAGCAAA 1210 CGGGGGGCCG GGGAGCAAAT TTGCAGGCTA CTGTCGGAAT TTGGTGTCTG ATATTCCCAA 18300363 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGGGCCG GGGAGCAAAT TTGCAGGCTA CTGTCGGAAT TTGGTGTCTG ATATTCCCAA 1270 TCTTGCAAAC CATAAGATGC CACCAGCTGC TGCTGAAGAG ACTCCTCCGT ACAGTAATTA 18300303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGCAAAC CATAAGATGC CACCAGCTGC TGCTGAAGAG ACTCCTCCGT ACAGTAATTA 1330 TAACACACTT CCCTGTAGGA AATCTCACTG TCTCTCTGAA GGTGCCACCA ACCCACAAAT 18300243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACACACTT CCCTGTAGGA AATCTCACTG TCTCTCTGAA GGTGCCACCA ACCCACAAAT 1390 TAGCCATAGC AACAGCATGC AAGGCAGAAG AGCTAAAACA ACTCAGGTAA AGTGATTGAA 18300183 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAGCCATAGC AACAGCATGC AAGGCAGAAG AGCTAAAACA ACTCAG.... .......... 1436 ATTTGTTTCA ATATTTTGGG AATGGTGCAT GACTCTTTAA GTGCATGACT TTGCTCTTAG 18300123 ........... .......... .......... .......... .......... .......... 1436 // intron part 18300122 18286443 (13680 n) not shown // //........ .......... .......... .......... .......... ........// CACGTGACCC TGGGTTCCTT CTCCACGTGA CGCTTGTCTT CTTTGCTCTC TCTTTCTGCT 18286383 ........... .......... .......... .......... .......... .......... 1436 CCCAAGGATG TTAATGCAGG CGAGGGCAGT GAGTTTGCAG ACAGTGGGAT TGAAGGGGCC 18286323 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GATG TTAATGCAGG CGAGGGCAGT GAGTTTGCAG ACAGTGGGAT TGAAGGGGCC 1490 ACTACCGACA CGGACCTCCT GTCCAGGCGA TCTAATGCCA CCAACTCCAG CTACTCACCC 18286263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACCGACA CGGACCTCCT GTCCAGGCGA TCTAATGCCA CCAACTCCAG CTACTCACCC 1550 ACCACAGGCC GGGCCTTTGT GGGCAGCGAC AGCGGCAGCA GCTCCACCGG GGATGCGGCT 18286203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACAGGCC GGGCCTTTGT GGGCAGCGAC AGCGGCAGCA GCTCCACCGG GGATGCGGCT 1610 CGTCAGGGGG TGTACGAGAA CTTCCGGCGG GAGCTGGAGA TGAGCACCAC CAACAGCGAG 18286143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCAGGGGG TGTACGAGAA CTTCCGGCGG GAGCTGGAGA TGAGCACCAC CAACAGCGAG 1670 AGCCTGGAGG AGGCCGGCTC GGCGCACAGC GATGAGCAGA GCAGCGGCAC CCTGAGCTCT 18286083 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGCCTGGAGG AGGCCGGCTC TGCGCACAGC GATGAGCAGA GCAGCGGCAC CCTGAGCTCT 1730 CCGGGCCAGT CGGACATCCT GCTGACCGCC GCACAGGGCA CGGTGCGCAA GGCCGGCGCC 18286023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGGCCAGT CGGACATCCT GCTGACCGCC GCACAGGGCA CGGTGCGCAA GGCCGGCGCC 1790 CTGGCCGTCA AGAACTTCCT GGTGCACAAG AAGAACAAGA AGGTGGAGTC AGCCACCCGG 18285963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCCGTCA AGAACTTCCT GGTGCACAAG AAGAACAAGA AGGTGGAGTC AGCCACCCGG 1850 AGGAAGTGGA AGCACTACTG GGTGTCCCTG AAAGGTGAGA GCGGGAGGGC CCCGGCTATG 18285903 |||||||||| |||||||||| |||||||||| |||| AGGAAGTGGA AGCACTACTG GGTGTCCCTG AAAG...... .......... .......... 1884 TGCCAAATGC ACCAATAGAG GTGCCCCGTT GTGCACATAC TCACGGGATG GGTGGGTTTG 18285843 ........... .......... .......... .......... .......... .......... 1884 // intron part 18285842 18279963 (5880 n) not shown // //........ .......... .......... .......... .......... ........// TTCCACGTGC TTTAATTTTC AGCCTCTGAC AGGGTGCACA TGTTAGGTTC AACTGTGGGT 18279903 ........... .......... .......... .......... .......... .......... 1884 TCTTTTGTTT CCCAAGCACT GAATACTCAT GCACACCCCT GTTCTGTTTC CTCAGGATGC 18279843 ||||| ........... .......... .......... .......... .......... .....GATGC 1889 ACGCTATTTT TCTACGAGAG CGACGGCAGG TCTGGGATAG ACCACAACAG CATCCCCAAA 18279783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCTATTTT TCTACGAGAG CGACGGCAGG TCTGGGATAG ACCACAACAG CATCCCCAAA 1949 CACGCCGTCT GGGTGGAGAA CAGCATTGTG CAGGCGGTGC CTGAGCACCC CAAGAAGGAC 18279723 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CACGCCGTCT GGGTGGAGAA CAGCATTGTG CAGGCTGTGC CTGAGCACCC CAAGAAGGAC 2009 TTTGTCTTCT GCCTCAGCAA TTCCCTGGGT GATGCCTTCC TTTTTCAGGT TTGTTGGGCA 18279663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTTGTCTTCT GCCTCAGCAA TTCCCTGGGT GATGCCTTCC TTTTTCAG.. .......... 2057 CTTCCTTTGC AGGGCATTTC AAACCTCTGA ACTGGCTACC TTCTTTTCTT GCCTAGGCAC 18279603 ........... .......... .......... .......... .......... .......... 2057 // intron part 18279602 18260223 (19380 n) not shown // //........ .......... .......... .......... .......... ........// ATTGCTTCTC TGGAAATGCT CCGGTTCATT TCTCTTAAGT TCCTAAGAGG TGCCTTTTTC 18260163 ........... .......... .......... .......... .......... .......... 2057 TTCCTGCCCC TTCTTCCTGG TACAGACCAC TAGCCAGACG GAGCTTGAAA ACTGGATCAC 18260103 ||||| |||||||||| |||||||||| |||||||||| ........... .......... .....ACCAC TAGCCAGACG GAGCTTGAAA ACTGGATCAC 2092 CGCCATCCAC TCTGCCTGCG CCACTGCGGT CGCGAGGCAC CACCACAAGG AAGACACGCT 18260043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCATCCAC TCTGCCTGCG CCACTGCGGT CGCGAGGCAC CACCACAAGG AAGACACGCT 2152 CCGACTCCTG AAATCAGAGA TCAAAAAACT GGAACAGAAG ATTGACATGG ATGAAAAGAT 18259983 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGACTCCTG AAATCAGAGA TCAAAAAACT GGAACAGAAG ATTGACATGG ATGAAAAGAT 2212 GAAGAAAATG GGTGAAATGC AGCTGTCTTC AGTCACTGAC TCAAAGAAAA AGAAAACAAT 18259923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAAATG GGTGAAATGC AGCTGTCTTC AGTCACTGAC TCAAAGAAAA AGAAAACAAT 2272 ATTAGATCAG GTAATCGTTC TTCCGTGTTT AGGTCCGGAC AAAATTGTTA GGTCTCTAAA 18259863 |||||||||| ATTAGATCAG .......... .......... .......... .......... .......... 2282 AGGGTTTTTT TTTTTTTTTG CTGTTTTGGA ATCGTGAAAC ATCATCGGAT ATCTCCTCGA 18259803 ........... .......... .......... .......... .......... .......... 2282 // intron part 18259802 18257883 (1920 n) not shown // //........ .......... .......... .......... .......... ........// TATAATGAAT GCCTTTACGA CATATAGATC TGTATAGGAT AAAGATATTA GCATTTGTTT 18257823 ........... .......... .......... .......... .......... .......... 2282 CCCATTTTCT CACTTTTTCT TTTCCCGTGT TTTCACTACC ATAGATCTTT GTCTGGGAGC 18257763 |||||| |||||||||| ........... .......... .......... .......... ....ATCTTT GTCTGGGAGC 2298 AAAATCTCGA GCAGTTCCAA ATGGACCTGT TTCGTTTCCG CTGTTATTTA GCCAGCCTTC 18257703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCTCGA GCAGTTCCAA ATGGACCTGT TTCGTTTCCG CTGTTATTTA GCCAGCCTTC 2358 AGGGTGGGGA GCTGCCAAAC CCCAAAAGGC TTCTCGCTTT TGCAAGTCGA CCAACGAAAG 18257643 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGTGGGGA GCTGCCAAAC CCCAAAAGGC TTCTCGCTTT TGCAAGTCGA CCAACGAAAG 2418 TGGCCATGGG CCGCCTTGGA ATCTTTTCGG TATCATCGTT TCATGCCCTG GTGAGTAGAA 18257583 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCCATGGG CCGCCTTGGA ATCTTTTCGG TATCATCGTT TCATGCCCTG .......... 2468 GCTAATGAAT TTTTGAAAAA CATTAAGCTT GACGCTTAAT CCTGAGCAGG ACTTGACAAG 18257523 ........... .......... .......... .......... .......... .......... 2468 // intron part 18257522 18252003 (5520 n) not shown // //........ .......... .......... .......... .......... ........// TTGGCTGGCA TGATGGAGGA GGGTTTTTTG AAGGGTGGGA CTTACGGGGA CCTCAAGGCA 18251943 ........... .......... .......... .......... .......... .......... 2468 CAAGTGGGTG GTCCTGATGC ATCTCCCTTG TGGCTGCTTG TCCTTGCCAT CCTCAGGTGG 18251883 |||| ........... .......... .......... .......... .......... ......GTGG 2472 CAGCACGCAC TGGTGAAACT GGAGTGAGAA GACGTACTCA GGCCATGTCC AGATCCGCGA 18251823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACGCAC TGGTGAAACT GGAGTGAGAA GACGTACTCA GGCCATGTCC AGATCCGCGA 2532 GCAAGCGAAG GAGCAGGTTT TCTTCTCTGT GGGGTCTGGA TACTACCTCC AAAAAGAAGC 18251763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCGAAG GAGCAGGTTT TCTTCTCTGT GGGGTCTGGA TACTACCTCC AAAAAGAAGC 2592 AGGGACGGCC AAGCATCAAT CAGGTAGGTT CCAGAGCAGA TGAAAAGTGA GCCCGCACAA 18251703 |||||||||| |||||||||| ||| AGGGACGGCC AAGCATCAAT CAG....... .......... .......... .......... 2615 ATCACTTCTG TGGCCACCTC AATTTGGGGT GTGTGTGTTT CTTCAGTGAG GCCGAGTGTT 18251643 ........... .......... .......... .......... .......... .......... 2615 // intron part 18251642 18247743 (3900 n) not shown // //........ .......... .......... .......... .......... ........// ATGCCCATTT CCTTCCCCCT TCCTACGTTT CGTTTGCCCT GTTGCCCAGA TTCCTTTTTA 18247683 ........... .......... .......... .......... .......... .......... 2615 AGGTGGTACT TTTGTATATG CAGGTGTTTG GAGAGGGAAC CGAAGCTGTA AAGAAATCTT 18247623 ||||||| |||||||||| |||||||||| |||||||||| ........... .......... ...GTGTTTG GAGAGGGAAC CGAAGCTGTA AAGAAATCTT 2652 TAGAGGGAAT ATTTGATGAC ATTGTTCCAG ATGGCAAGGT AAAAATAAAC GTGTGTTTTC 18247563 |||||||||| |||||||||| |||||||||| |||||||| TAGAGGGAAT ATTTGATGAC ATTGTTCCAG ATGGCAAG.. .......... .......... 2690 TTTTCTAAAA GTACCACAAG TGCATCAACA TATACATGGT GCAGTGTTGT CTTGAGCTAC 18247503 ........... .......... .......... .......... .......... .......... 2690 // intron part 18247502 18244503 (3000 n) not shown // //........ .......... .......... .......... .......... ........// CTGTTTTCAT GGGAATCGGT GATTCCTGTG TGCAGTCTGG GAATCTAGGG TTGTCAGAGC 18244443 ........... .......... .......... .......... .......... .......... 2690 TCCACTGCTG CTGCCCTGCT AACTTTATTT CTTGTTATAG AGGGAGAAAG AAGTGGTCTT 18244383 |||||||||| |||||||||| ........... .......... .......... .......... AGGGAGAAAG AAGTGGTCTT 2710 ACCTAACGTT CACCAGCACA ACCCTGACTG CGACATTTGG GTCCACGAGT ATTTCACTCC 18244323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAACGTT CACCAGCACA ACCCTGACTG CGACATTTGG GTCCACGAGT ATTTCACTCC 2770 ATCCTGGTTC TGTCTGCCCA ATAATCAGCC TGCCCTGACG GTCGTCCGGC CAGGCGACAC 18244263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTGGTTC TGTCTGCCCA ATAATCAGCC TGCCCTGACG GTCGTCCGGC CAGGCGACAC 2830 TGCACGGGAC ACCCTGGAGC TGATTTGCAA GGTATGGAGC TGCTTTGGGT TGTTTCTCCA 18244203 |||||||||| |||||||||| |||||||||| | TGCACGGGAC ACCCTGGAGC TGATTTGCAA G......... .......... .......... 2861 AGAAGAGCAG AATGGGGTGT AGCAATCTTC TAAGGCACAT GTGGAAACCC AGAGCCGTGT 18244143 ........... .......... .......... .......... .......... .......... 2861 // intron part 18244142 18237303 (6840 n) not shown // //........ .......... .......... .......... .......... ........// AACTCTATTG GTCATAGGAA TACATCGTAT GTTGGTGGAG AACTAATTGT GCCTATTTAC 18237243 ........... .......... .......... .......... .......... .......... 2861 TATTGAACAG ACATTTTCTT TCTTTCTTTC TTTTTTGTCC CAGACACATC AACTGGATCA 18237183 ||||||| |||||||||| ........... .......... .......... .......... ...ACACATC AACTGGATCA 2878 TTCTGCTCAT TACCTGCGCC TGAAATTTCT AATAGAAAAC AAAATGCAGC TCTATGTTCC 18237123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGCTCAT TACCTGCGCC TGAAATTTCT AATAGAAAAC AAAATGCAGC TCTATGTTCC 2938 ACAGCCCGAG GAAGACATCT ATGAGCTGGT AATGTTATGA CTGTTGTCCA AGCACACTTT 18237063 |||||||||| |||||||||| |||||||| ACAGCCCGAG GAAGACATCT ATGAGCTG.. .......... .......... .......... 2966 ATGGGAGATT ATCTTCAAAT TATGAGTGTT CTCGTGTTAA TTGTAGTTGG TGGAGTGGAA 18237003 ........... .......... .......... .......... .......... .......... 2966 // intron part 18237002 18229563 (7440 n) not shown // //........ .......... .......... .......... .......... ........// TGAAATGATG ACCATTTTTA AAAGTTAGTT ATAATGAAAT TCTAATTAGA TTCCCCTTTG 18229503 ........... .......... .......... .......... .......... .......... 2966 TAACTTTCAG CTGTACAAAG AAATTGAAAT CTGTCCAAAA GTCACTCAGA GCATCCACAT 18229443 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ........... CTGTACAAAG AAATTGAAAT CTGTCCAAAA GTCACTCACA GCATCCACAT 3016 TGAGAAGTCA GATACAGCTG CTGATACTTA CGGTAAGTTT ATTTTTCTTT GTTTGTGTTT 18229383 |||||||||| |||||||||| |||||||||| || TGAGAAGTCA GATACAGCTG CTGATACTTA CG........ .......... .......... 3048 TAAGGTAAAG TATTTCTTAT GTAAGCATGC ATTTATTTAC AGTTCAACAA AATGCCTTTG 18229323 ........... .......... .......... .......... .......... .......... 3048 // intron part 18229322 18221343 (7980 n) not shown // //........ .......... .......... .......... .......... ........// ACTTCCTGTT GTTTGCTAAA CATTCAGAAG GTGTGAGCCC TGCCATTCTG TCTTTTTGTG 18221283 ........... .......... .......... .......... .......... .......... 3048 TTTCACAGGG TTTTCACTTT CTTCTGTGGA AGAAGATGGT ATTCGAAGGC TGTACGTGAA 18221223 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........GG TTTTCACTTT CTTCTGTGGA AGAAGATGGT ATTCGAAGGC TGTACGTGAA 3100 TAGTGTGAAG GAAACCGGTT TAGCTTCCAA GAAAGGTAAG TCAGTGAAGG AGGGCTGGTC 18221163 |||||||||| |||||||||| |||||||||| ||||| TAGTGTGAAG GAAACCGGTT TAGCTTCCAA GAAAG..... .......... .......... 3135 TGTCTGTCTT AAATGCCCTT TGGGGCTTCT CTAGTTTTTG AAGGAGAAAG ATATGCCCAA 18221103 ........... .......... .......... .......... .......... .......... 3135 // intron part 18221102 18216903 (4200 n) not shown // //........ .......... .......... .......... .......... ........// CAGAGCTCCT AAGCTGTTGT GTTCTGATAA TGTGTGTGAA ATTAAAAATT TTCCATCTTG 18216843 ........... .......... .......... .......... .......... .......... 3135 CGTTGGCAGG CCTGAAAGCA GGAGATGAGA TTCTTGAGAT CAATAATCGT GCTGCTGACG 18216783 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..........G CCTGAAAGCA GGAGATGAGA TTCTTGAGAT CAATAATCGT GCTGCTGACG 3186 CCCTGAACTC TTCTATGCTC AAAGATTTCC TCTCACAGCC CTCGCTGGGC CTCCTGGTGA 18216723 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CCCTGAACTC TTCTATGCTC AAAGATTTCC TCTCACAACC CTCGCTGGGC CTCCTGGTGA 3246 GGACCTACCC CGAGCTGGAG GAAGGAGTGG AGCTGCTGGA AAGCCCGCCC CACCGAGTGG 18216663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCTACCC CGAGCTGGAG GAAGGAGTGG AGCTGCTGGA AAGCCCGCCC CACCGAGTGG 3306 ACGGCCCTGC CGACCTTGGC GAGAGCCCCC TCGCCTTTCT CACCAGCAAC CCAGGTATGG 18216603 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||| ACGGCCCTGC CGACCTTGAC GAGAGCCCCC TCGCCTTTCT CACCAGCAAC CCAG...... 3360 CTGTGCAGGG TGCTGGGGGC GAGTCTGAAC TCCGTTGTGC CACGACCCGG GGAGTTTATC 18216543 ........... .......... .......... .......... .......... .......... 3360 // intron part 18216542 18199323 (17220 n) not shown // //........ .......... .......... .......... .......... ........// CACACAGGGG TGGCTTTTAG CAATTACTGT CCATGTTGAC CCACATTTTC TTCTGATTTC 18199263 ........... .......... .......... .......... .......... .......... 3360 ATCTGACAGG GCACAGCCTT TGCAGCGAGC AGGGCAGCAG TGCTGAGACC GCTCCAGAGG 18199203 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..........G GCACAGCCTT TGCAGCGAGC AGGGCAGCAG TGCTGAGACC GCTCCAGAGG 3411 AGACCGAGGG GCCAGACTTG GAATCCTCAG ATGAGACTGA TCACAGCAGC AAGGTGAGAG 18199143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AGACCGAGGG GCCAGACTTG GAATCCTCAG ATGAGACTGA TCACAGCAGC AAG....... 3464 ATTTTCATTT TCACATCCCA TGCTTTGAAC CACTGAAGAA TCACAGCTGA CAATGTCACC 18199083 ........... .......... .......... .......... .......... .......... 3464 // intron part 18199082 18188703 (10380 n) not shown // //........ .......... .......... .......... .......... ........// GGAGAACACC TCTAGGCGGT CCAGGTGTCA GGTGCGTCTA ATGAGGGATA ATGACCTCTG 18188643 ........... .......... .......... .......... .......... .......... 3464 CCTTCCCTTC CCCCCTGTGC TCCGAAGAGT ACAGAACAGG TGGCCGCATT TTGCCGCAGT 18188583 ||| |||||||||| |||||||||| |||||||||| ........... .......... .......AGT ACAGAACAGG TGGCCGCATT TTGCCGCAGT 3497 TTGCATGAGA TGAACCCCTC TGACCAGAGC CCATCTCCTC AGGACTCCAC GGGGCCTCAG 18188523 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TTGCATGAGA TGAACCCCTC TGACCAGAAC CCATCTCCTC AGGACTCCAC GGGGCCTCAG 3557 CTGGCGACCA TGAGACAACT CTCGGATGCA GATAAGCTGC GCAAGGTGAT CTGCGAGCTC 18188463 |||||||||| |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| CTGGCGACCA TGAGACAACT CTCGGATGCA GATAACGTGC GCAAGGTGAT CTGCGAGCTC 3617 CTGGAGACGG AGCGCACCTA CGTGAAGGTA TGTTTCTTTT TTCTCCCCCT GCCCTCCCTC 18188403 |||||||||| |||||||||| ||||||| CTGGAGACGG AGCGCACCTA CGTGAAG... .......... .......... .......... 3644 TGCCTCGTAA AGGAGTGAAG TTGGTGTGTC TGCTGGTTTT CATTAACAGC TGATTTAAAC 18188343 ........... .......... .......... .......... .......... .......... 3644 // intron part 18188342 18187443 (900 n) not shown // //........ .......... .......... .......... .......... ........// GATCTGTTTG TTCTCTTCTA GATCCTTTTA TAGACATTAA CATATGCTTT ATACTTTAAG 18187383 ........... .......... .......... .......... .......... .......... 3644 TTCTAGGGTA TATAAAAAAT AAAACACATA AGCTAATGAG TTCTCTTTTC AATTCTTAGG 18187323 | ........... .......... .......... .......... .......... .........G 3645 ATTTAAACTG TCTTATGGAG AGATACCTAA AGCCTCTTCA AAAAGAAACT TTTCTCACCC 18187263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAAACTG TCTTATGGAG AGATACCTAA AGCCTCTTCA AAAAGAAACT TTTCTCACCC 3705 AGGATGAGGT ATGCTGGAAA TGGTTTCAAC TTTGTGACCA TCATACCGTG GTTTGACTTG 18187203 |||||||| AGGATGAG.. .......... .......... .......... .......... .......... 3713 TTGGTAAAGA GGAAAAATGG GGACATGCGT AACACTGAAA ACATTTTAAA TTTATTTAAT 18187143 ........... .......... .......... .......... .......... .......... 3713 // intron part 18187142 18187023 (120 n) not shown // //........ .......... .......... .......... .......... ........// GTAATCAGAT ATAAATAACG TTTAGGAAGA CTAATGAGAT ATGAGGTGCA TTAAATTCTG 18186963 ........... .......... .......... .......... .......... .......... 3713 TTTTATTTCT AGCTTGACGT GCTTTTTGGA AATTTAACGG AAATGGTAGA GTTTCAAGTA 18186903 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........... ..CTTGACGT GCTTTTTGGA AATTTAACGG AAATGGTAGA GTTTCAAGTA 3761 GAATTCCTTA AAACTCTAGA AGATGGAGTG AGACTGGTAC CTGATTTGGA AAAGCTTGAG 18186843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTCCTTA AAACTCTAGA AGATGGAGTG AGACTGGTAC CTGATTTGGA AAAGCTTGAG 3821 AAGGTTGATC AATTTAAGGT AAATAGTGCA AAGCTGCCTC CAGCGTCAGG GCTATAGTGT 18186783 |||||||||| |||||||| AAGGTTGATC AATTTAAG.. .......... .......... .......... .......... 3839 GGCTCAAGTT GAATCCCCTG ATCGTGTTGA TGTCTTCATT GGAGGGCCAC AGTGGGGTCT 18186723 ........... .......... .......... .......... .......... .......... 3839 // intron part 18186722 18181263 (5460 n) not shown // //........ .......... .......... .......... .......... ........// TGCCATAACC TGCTGATATT TCCAGTGGAG GAAGGAAACA ACCAACTGTG CCTTTTCTCG 18181203 ........... .......... .......... .......... .......... .......... 3839 TCAAATCCAG AAAGTGCTGT TCTCTCTGGG GGGATCATTC CTGTATTATG CTGACCGCTT 18181143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........... AAAGTGCTGT TCTCTCTGGG GGGATCATTC CTGTATTATG CTGACCGCTT 3889 CAAGCTCTAC AGTGCCTTCT GCGCCAGCCA CACAAAAGTT CCCAAGGTCC TGGTGAAAGG 18181083 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| CAAGCTCTAC AGTGCCTTCT GCGCCATCCA CACAAAAGTT CCCAAGGTCC TGGTGAAAG. 3948 TAAGGCCTCT GAGGATGTGG AGGTGGGGGT GTGTTGCTTG TCAGTTGTGT GGCTGACAGT 18181023 ........... .......... .......... .......... .......... .......... 3948 // intron part 18181022 18175803 (5220 n) not shown // //........ .......... .......... .......... .......... ........// CTCAGTCCTG CAAAAAGGCA CCTTGGAGTC ACTGAGGAAG GGAGGGAAAT TGTGGGAAGG 18175743 ........... .......... .......... .......... .......... .......... 3948 GAGTCACGTG GGCGTTCCAC CCCCATGACC TGTGTTTAAA CCCTGCCAGC CAAGACAGAC 18175683 | |||||||||| ........... .......... .......... .......... .........C CAAGACAGAC 3959 ACGGCTTTCA AGGCATTCTT GGATGCCCAG AACCCGAAGC AGCAGCACTC ATCCACGCTG 18175623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGCTTTCA AGGCATTCTT GGATGCCCAG AACCCGAAGC AGCAGCACTC ATCCACGCTG 4019 GAGTCGTACC TCATCAAGCC CATCCAGAGG ATCCTCAAGT ACCCACTTCT GCTCAGGGAG 18175563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCGTACC TCATCAAGCC CATCCAGAGG ATCCTCAAGT ACCCACTTCT GCTCAGGGAG 4079 CTGTTCGCCC TGACCGATGC GGAGAGCGAG GAGCACTACC ACCTGGACGG TAGGCCTCGG 18175503 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGTTCGCCC TGACCGATGC GGAGAGCGAG GAGCACTACC ACCTGGACG. .......... 4128 CCTGGGACCC CCGGCAGGCC TGAGTCTCCA TGAGGGTCTC TAAATAGCCT CTCATTTCAC 18175443 ........... .......... .......... .......... .......... .......... 4128 AACCTGTTTT CTTCCAGTGG CCATCAAGAC CATGAACAAG GTTGCCAGTC ACATCAATGA 18175383 ||| |||||||||| |||||||||| |||||||||| |||||||||| ........... .......TGG CCATCAAGAC CATGAACAAG GTTGCCAGTC ACATCAATGA 4171 GATGCAGAAA ATCCATGAAG AGTTTGGGGC TGTGTTTGAC CAGCTGATTG CTGAACAGAC 18175323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAGAAA ATCCATGAAG AGTTTGGGGC TGTGTTTGAC CAGCTGATTG CTGAACAGAC 4231 TGGTGAGAAA AAAGAGGTGA GGGTCCCCAT CTTCTCAGGA CATCTGTCAG GAAAGCCGAG 18175263 |||||||||| |||||| TGGTGAGAAA AAAGAG.... .......... .......... .......... .......... 4247 TTTGAGTTTG CTTTTATTTA TTTATTTATT TTTTAAAAAG GTGTTACTTG TAAGTAAAAT 18175203 ........... .......... .......... .......... .......... .......... 4247 // intron part 18175202 18170343 (4860 n) not shown // //........ .......... .......... .......... .......... ........// CAGTATTTTC TTGAAGTAAA ATTAATATCA GCATGCTGAA TTTTCAAACA TCATGAAAAT 18170283 ........... .......... .......... .......... .......... .......... 4247 CTGAGTATTG ATAACACCAC CCAGTAAGCT TTGTCACGTC TCTGGCTTTC AGGTTGCAGA 18170223 |||||||| ........... .......... .......... .......... .......... ..GTTGCAGA 4255 TCTGAGCATG GGAGACCTGC TTTTGCACAC TACCGTGATC TGGCTGAACC CGCCGGCCTC 18170163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGAGCATG GGAGACCTGC TTTTGCACAC TACCGTGATC TGGCTGAACC CGCCGGCCTC 4315 GCTGGGCAAG TGGAAAAAGG AACCAGAGTT GGCAGCATTC GGTGTGTATC AGAAAAGCGT 18170103 |||||||||| |||||||||| |||||||||| |||||||||| | GCTGGGCAAG TGGAAAAAGG AACCAGAGTT GGCAGCATTC G......... .......... 4356 TTTATGGAGG GGGAAAAGTC TAGCTTAGTT TTCAAAACAA GAACATTTCT TTTTCAAGAC 18170043 ........... .......... .......... .......... .......... .......... 4356 // intron part 18170042 18165243 (4800 n) not shown // //........ .......... .......... .......... .......... ........// AACGTCCTCT TCATAACTGT AGTGTTTATT ACCACAAGTT GGTGATGTCA AGGGGAAAAC 18165183 ........... .......... .......... .......... .......... .......... 4356 CCTACACATG ACATACCATA ACTGTCTTTA TTTTATTTTT TCCAGTCTTC AAAACTGCTG 18165123 ||||| |||||||||| ........... .......... .......... .......... .....TCTTC AAAACTGCTG 4371 TGGTCCTTGT GTATAAAGAT GGTTCCAAAC AGAAGAAGAA ACTTGTAAGA CATCTTATGT 18165063 |||||||||| |||||||||| |||||||||| |||||||||| |||| TGGTCCTTGT GTATAAAGAT GGTTCCAAAC AGAAGAAGAA ACTT...... .......... 4415 TACCCCATGG TTTGAAACTA TTTCTCTATC TGCTTATCAG TTATGCCTGC ATAATTCTAC 18165003 ........... .......... .......... .......... .......... .......... 4415 // intron part 18165002 18164583 (420 n) not shown // //........ .......... .......... .......... .......... ........// GCTGGTTTAG AAAATGCAGG GAACTGGTCC GGGGCAGGTT AGATTCTTCT TATGCAGCTG 18164523 ........... .......... .......... .......... .......... .......... 4415 GTTCCTTCTC CTCTGCAGGT AGGATCTCAC AGGCTTTCCA TTTATGAGGA CTGGGACCCC 18164463 || |||||||||| |||||||||| |||||||||| |||||||||| ........... ........GT AGGATCTCAC AGGCTTTCCA TTTATGAGGA CTGGGACCCC 4457 TTCAGATTTC GACACATGAT CCCCACGGAA GCGCTGCAGG TTCGAGCTTT GGCGAGTGCA 18164403 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGATTTC GACACATGAT CCCCACGGAA GCGCTGCAGG TTCGAGCTTT GGCGAGTGCA 4517 GGTAAACTCT CACCTGTGCT GGGTATTTCA CACACATATT TCTGATGTGT GTAGGAATTA 18164343 | G......... .......... .......... .......... .......... .......... 4518 TTTGTTTGAA TCCACACTCT TGGTCTAACT CTTCTACCGT CTTTTTTTTT TTTTTTTCCC 18164283 ........... .......... .......... .......... .......... .......... 4518 // intron part 18164282 18161403 (2880 n) not shown // //........ .......... .......... .......... .......... ........// AAACATGTAA ATAAATCCAC TTGAAACATA CCCTGATTCA TTGTTGTTTT AATTTCTTTA 18161343 ........... .......... .......... .......... .......... .......... 4518 GATGCAGAGG CAAATGCCGT GTGTGAAATT GTCCATGTAA AATCCGAGTC TGAAGGGAGG 18161283 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..ATGCAGAGG CAAATGCCGT GTGTGAAATT GTCCATGTAA AATCCGAGTC TGAAGGGAGG 4577 CCGGAGAGGG TCTTTCACTT GTGCTGCAGG TGAGCCTGGG CCTGTAAAGT CGAGGCCGTG 18161223 |||||||||| |||||||||| ||||||||| CCGGAGAGGG TCTTTCACTT GTGCTGCAG. .......... .......... .......... 4606 TTGACATTTC TGCAGATTGG AACGGTTTGG TGTCTTACGT TGTGTTCTGG TGTTTGGTAC 18161163 ........... .......... .......... .......... .......... .......... 4606 // intron part 18161162 18159003 (2160 n) not shown // //........ .......... .......... .......... .......... ........// GGCCTCAGTC TTTAGCCTTT GGCCCTAAGG GATATTTATT TGGTTGCACC TGATAACCTT 18158943 ........... .......... .......... .......... .......... .......... 4606 AGAAGTTCCC CATGTGTTAA GCCCTGATTC TCTAACATCT GTAAATCTTC TTTTCCTAGC 18158883 | ........... .......... .......... .......... .......... .........C 4607 TCCCCAGAGA GCCGAAAGGA TTTCCTAAAG GCTGTGCATT CAATCCTGCG TGATAAGCAC 18158823 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCCAGAGA GCCGAAAGGA TTTCCTAAAG GCTGTGCATT CAATCCTGCG TGATAAGCAC 4667 AGAAGACAGC TCCTCAAAAC CGAGAGCCTT CCCTCATCCC AGCAATATGT CCCTTTTGGA 18158763 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGACAGC TCCTCAAAAC CGAGAGCCTT CCCTCATCCC AGCAATATGT CCCTTTTGGA 4727 GGCAAAAGAT TGTGTGCACT GAAGGGGGCC AGGCCGGCCA TGAGCAGGGC AGGTACTGTG 18158703 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GGCAAAAGAT TGTGTGCACT GAAGGGGGCC AGGCCGGCCA TGAGCAGGGC AG........ 4779 GGGATTCGGA CGTTCAAGAT TCCCGTCACC CCCACTCCGC AGTAGAACTC CAGTGAGCTT 18158643 ........... .......... .......... .......... .......... .......... 4779 // intron part 18158642 18155103 (3540 n) not shown // //........ .......... .......... .......... .......... ........// TCCTTTGCTT TCTGGATTTT CATCTCACGT AAAGCATGTG GGGGTTTTAT TTTTATATTT 18155043 ........... .......... .......... .......... .......... .......... 4779 TTGTGTGTGT GTGCAGTGTC TGCCCCAAGC AAGTCTCTTG GGAGGAGGAG GCGGCGGCTG 18154983 |||| |||||||||| |||||||||| |||||||||| |||||||||| ........... ......TGTC TGCCCCAAGC AAGTCTCTTG GGAGGAGGAG GCGGCGGCTG 4823 GCTCGAAACA GGTTTACCAT TGATTCTGAT GCCGTCTCCG CAAGCAGCCC GGAGAAAGAG 18154923 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCGAAACA GGTTTACCAT TGATTCTGAT GCCGTCTCCG CAAGCAGCCC GGAGAAAGAG 4883 TCCCAGCAGC CCCCCGGTGG TGGGGACACT GACCGATGGG TAGAGGAGCA GTTTGATCTT 18154863 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAGCAGC CCCCCGGTGG TGGGGACACT GACCGATGGG TAGAGGAGCA GTTTGATCTT 4943 GCTCAGTATG AGGAGCAAGA TGACATCAAG GAGACAGACA TCCTCAGTGA CGATGATGAG 18154803 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCAGTATG AGGAGCAAGA TGACATCAAG GAGACAGACA TCCTCAGTGA CGATGATGAG 5003 TTCTGTGAGT CCGTGAAGGG TGCCTCAGTG GACAGAGACC TGCAGGAGCG GCTTCAGGCC 18154743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGTGAGT CCGTGAAGGG TGCCTCAGTG GACAGAGACC TGCAGGAGCG GCTTCAGGCC 5063 ACCTCCATCA GTCAGCGGGA AAGAGGCCGG AAAACCCTGG ATAGTCACGC GTCCCGCATG 18154683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTCCATCA GTCAGCGGGA AAGAGGCCGG AAAACCCTGG ATAGTCACGC GTCCCGCATG 5123 GCACAGCTCA AGAAGCAAGC TGCCCTGTCG GGGATCAATG GAGGCCTGGA GAGCGCAAGC 18154623 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACAGCTCA AGAAGCAAGC TGCCCTGTCG GGGATCAATG GAGGCCTGGA GAGCGCAAGC 5183 GAGGAAGTCA TTTGGGTTAG GCGTGAAGAC TTTGCCCCCT CCAGGAAACT GAACACTGAG 18154563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAGTCA TTTGGGTTAG GCGTGAAGAC TTTGCCCCCT CCAGGAAACT GAACACTGAG 5243 ATCTGACTGC GTCACCTGCC CCGTAGAGAA TGTGTGTAGA TACTTCCTGC CCTAACTCTG 18154503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGACTGC GTCACCTGCC CCGTAGAGAA TGTGTGTAGA TACTTCCTGC CCTAACTCTG 5303 CCCACCCTCC TGTACCGTCG ACAAGAATGT CCCCTTAGGT CGCGCTCTTG CACACACGGT 18154443 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCACCCTCC TGTACCGTCG ACAAGAATGT CCCCTTAGGT CGCGCTCTTG CACACACGGT 5363 TTTGGCAGCT GACTTGGTTC TGAAGCCATG TAGCCACCCA ACTTTGTCAT TTTCAACAAC 18154383 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGCAGCT GACTTGGTTC TGAAGCCATG TAGCCACCCA ACTTTGTCAT TTTCAACAAC 5423 ATCAGAAAGA ATTGATCAGA ATCCCAAATA A 18154352 |||||||||| |||||||||| |||||||||| | ATCAGAAAGA ATTGATCAGA ATCCCAAATA A 5454 -------------------------------------------------------------------------------- Predicted gene locations (1): PGL 1 (- strand): 18593162 18154352 AGS-1 (18593162 18593111,18498219 18498167,18373608 18373429,18311095 18310919,18301170 18300197,18286376 18285929,18279847 18279675,18260137 18259913,18257778 18257593,18251886 18251740,18247659 18247585,18244402 18244232,18237199 18237095,18229492 18229411,18221274 18221188,18216833 18216609,18199253 18199150,18188615 18188436,18187323 18187255,18186950 18186825,18181192 18181084,18175693 18175514,18175425 18175307,18170230 18170122,18165137 18165079,18164504 18164402,18161341 18161254,18158883 18158711,18155026 18154352) SCR (e 0.981 d 0.992 a 1.000,e 1.000 d 0.700 a 0.999,e 1.000 d 0.986 a 0.997,e 1.000 d 0.981 a 0.931,e 0.996 d 0.984 a 0.979,e 0.998 d 0.983 a 0.997,e 0.994 d 0.780 a 0.988,e 1.000 d 0.917 a 0.980,e 1.000 d 0.939 a 0.992,e 1.000 d 0.959 a 0.891,e 1.000 d 0.842 a 0.989,e 1.000 d 0.967 a 0.999,e 1.000 d 0.282 a 0.994,e 0.988 d 0.999 a 1.000,e 1.000 d 0.989 a 0.985,e 0.991 d 0.935 a 0.910,e 1.000 d 0.994 a 0.786,e 0.983 d 0.997 a 0.997,e 1.000 d 0.793 a 0.993,e 1.000 d 0.879 a 0.865,e 0.991 d 0.999 a 0.157,e 1.000 d 0.978 a 0.994,e 1.000 d 0.967 a 0.990,e 1.000 d 0.882 a 0.999,e 1.000 d 0.790 a 0.902,e 1.000 d 0.757 a 0.999,e 1.000 d 0.971 a 0.994,e 1.000 d 0.742 a 0.985,e 1.000) Exon 1 18593162 18593111 ( 52 n); score: 0.981 Intron 1 18593110 18498220 (94891 n); Pd: 0.992 Pa: 1.000 Exon 2 18498219 18498167 ( 53 n); score: 1.000 Intron 2 18498166 18373609 (124558 n); Pd: 0.700 Pa: 0.999 Exon 3 18373608 18373429 ( 180 n); score: 1.000 Intron 3 18373428 18311096 (62333 n); Pd: 0.986 Pa: 0.997 Exon 4 18311095 18310919 ( 177 n); score: 1.000 Intron 4 18310918 18301171 (9748 n); Pd: 0.981 Pa: 0.931 Exon 5 18301170 18300197 ( 974 n); score: 0.996 Intron 5 18300196 18286377 (13820 n); Pd: 0.984 Pa: 0.979 Exon 6 18286376 18285929 ( 448 n); score: 0.998 Intron 6 18285928 18279848 (6081 n); Pd: 0.983 Pa: 0.997 Exon 7 18279847 18279675 ( 173 n); score: 0.994 Intron 7 18279674 18260138 (19537 n); Pd: 0.780 Pa: 0.988 Exon 8 18260137 18259913 ( 225 n); score: 1.000 Intron 8 18259912 18257779 (2134 n); Pd: 0.917 Pa: 0.980 Exon 9 18257778 18257593 ( 186 n); score: 1.000 Intron 9 18257592 18251887 (5706 n); Pd: 0.939 Pa: 0.992 Exon 10 18251886 18251740 ( 147 n); score: 1.000 Intron 10 18251739 18247660 (4080 n); Pd: 0.959 Pa: 0.891 Exon 11 18247659 18247585 ( 75 n); score: 1.000 Intron 11 18247584 18244403 (3182 n); Pd: 0.842 Pa: 0.989 Exon 12 18244402 18244232 ( 171 n); score: 1.000 Intron 12 18244231 18237200 (7032 n); Pd: 0.967 Pa: 0.999 Exon 13 18237199 18237095 ( 105 n); score: 1.000 Intron 13 18237094 18229493 (7602 n); Pd: 0.282 Pa: 0.994 Exon 14 18229492 18229411 ( 82 n); score: 0.988 Intron 14 18229410 18221275 (8136 n); Pd: 0.999 Pa: 1.000 Exon 15 18221274 18221188 ( 87 n); score: 1.000 Intron 15 18221187 18216834 (4354 n); Pd: 0.989 Pa: 0.985 Exon 16 18216833 18216609 ( 225 n); score: 0.991 Intron 16 18216608 18199254 (17355 n); Pd: 0.935 Pa: 0.910 Exon 17 18199253 18199150 ( 104 n); score: 1.000 Intron 17 18199149 18188616 (10534 n); Pd: 0.994 Pa: 0.786 Exon 18 18188615 18188436 ( 180 n); score: 0.983 Intron 18 18188435 18187324 (1112 n); Pd: 0.997 Pa: 0.997 Exon 19 18187323 18187255 ( 69 n); score: 1.000 Intron 19 18187254 18186951 ( 304 n); Pd: 0.793 Pa: 0.993 Exon 20 18186950 18186825 ( 126 n); score: 1.000 Intron 20 18186824 18181193 (5632 n); Pd: 0.879 Pa: 0.865 Exon 21 18181192 18181084 ( 109 n); score: 0.991 Intron 21 18181083 18175694 (5390 n); Pd: 0.999 Pa: 0.157 Exon 22 18175693 18175514 ( 180 n); score: 1.000 Intron 22 18175513 18175426 ( 88 n); Pd: 0.978 Pa: 0.994 Exon 23 18175425 18175307 ( 119 n); score: 1.000 Intron 23 18175306 18170231 (5076 n); Pd: 0.967 Pa: 0.990 Exon 24 18170230 18170122 ( 109 n); score: 1.000 Intron 24 18170121 18165138 (4984 n); Pd: 0.882 Pa: 0.999 Exon 25 18165137 18165079 ( 59 n); score: 1.000 Intron 25 18165078 18164505 ( 574 n); Pd: 0.790 Pa: 0.902 Exon 26 18164504 18164402 ( 103 n); score: 1.000 Intron 26 18164401 18161342 (3060 n); Pd: 0.757 Pa: 0.999 Exon 27 18161341 18161254 ( 88 n); score: 1.000 Intron 27 18161253 18158884 (2370 n); Pd: 0.971 Pa: 0.994 Exon 28 18158883 18158711 ( 173 n); score: 1.000 Intron 28 18158710 18155027 (3684 n); Pd: 0.742 Pa: 0.985 Exon 29 18155026 18154352 ( 675 n); score: 1.000 PGS (18593162 18593111,18498219 18498167,18373608 18373429,18311095 18310919,18301170 18300197,18286376 18285929,18279847 18279675,18260137 18259913,18257778 18257593,18251886 18251740,18247659 18247585,18244402 18244232,18237199 18237095,18229492 18229411,18221274 18221188,18216833 18216609,18199253 18199150,18188615 18188436,18187323 18187255,18186950 18186825,18181192 18181084,18175693 18175514,18175425 18175307,18170230 18170122,18165137 18165079,18164504 18164402,18161341 18161254,18158883 18158711,18155026 18154352) NM_003253+ 3-phase translation of AGS-1 (-strand): . . . . . . : 18593162 tgccccgcatcgtgcccggccccgtcgcggagatcccggacgaccgtcgcgg : gttgatgg C P A S C P A P S R R S R T T V A : G * W A P H R A R P R R G D P G R P S R : V D G P R I V P G P V A E I P D D R R G : L M . . . . . : . 18498211 tcgcattccagatgtaaacagcttcagaagcctgacggtcatatg : gtagaatcactgtgg S H S R C K Q L Q K P D G H M : V E S L W R I P D V N S F R S L T V I W : * N H C G V A F Q M * T A S E A * R S Y : G R I T V . . . . . . 18373593 actgagacccacctttctagacctgaagcccaggaggaggaagaggaggctggttggtac T E T H L S R P E A Q E E E E E A G W Y L R P T F L D L K P R R R K R R L V G T D * D P P F * T * S P G G G R G G W L V . . . . . . 18373533 catgggcataatgctctgaatcctagtctctcacctagtatgtgagcagtccctgcagat H G H N A L N P S L S P S M * A V P A D M G I M L * I L V S H L V C E Q S L Q M P W A * C S E S * S L T * Y V S S P C R . . . . . : . 18373473 ggcccatttggagatcttgacaaagcctcttctgtttccaatggg : gtttttggcgcattc G P F G D L D K A S S V S N G : V F G A F A H L E I L T K P L L F P M G : F L A H S W P I W R S * Q S L F C F Q W : G F W R I . . . . . . 18311080 tcacagacttagatgaaactgtgatggccaccgcagggggcaggtgctgacatcgtcccc S Q T * M K L * W P P Q G A G A D I V P H R L R * N C D G H R R G Q V L T S S P L T D L D E T V M A T A G G R C * H R P . . . . . . 18311020 agccctgtggctgttcatccggacatcatttccaacctcaatatctaaatgccacagtgc S P V A V H P D I I S N L N I * M P Q C A L W L F I R T S F P T S I S K C H S A Q P C G C S S G H H F Q P Q Y L N A T V . . . . . : . 18310960 tcttggagcaagttgggctggggaccactgttgccttttaag : accataaaaccatgggaa S W S K L G W G P L L P F K : T I K P W E L G A S W A G D H C C L L R : P * N H G K L L E Q V G L G T T V A F * : D H K T M G . . . . . . 18301152 acgcagaaagtcaacatgtagagcacgagttttatggagaaaagcatgccagcctggggc T Q K V N M * S T S F M E K S M P A W G R R K S T C R A R V L W R K A C Q P G A N A E S Q H V E H E F Y G E K H A S L G . . . . . . 18301092 gcaagcacacttcccgctccctgcgcctctcgcacaagacgcggaggaccaggcacgctt A S T L P A P C A S R T R R G G P G T L Q A H F P L P A P L A Q D A E D Q A R F R K H T S R S L R L S H K T R R T R H A . . . . . . 18301032 cctcggggaaggtgatccacaggaactccgaagtgagcacccgatccagcagcaccccca P R G R * S T G T P K * A P D P A A P P L G E G D P Q E L R S E H P I Q Q H P Q S S G K V I H R N S E V S T R S S S T P . . . . . . 18300972 gcatcccccagtccctggctgaaaatggcctggagcccttctcccaagatggtaccctag A S P S P W L K M A W S P S P K M V P * H P P V P G * K W P G A L L P R W Y P R S I P Q S L A E N G L E P F S Q D G T L . . . . . . 18300912 aagacttcgggagccccatctgggtggaccgagtggacatgggcttgagacctgtgtctt K T S G A P S G W T E W T W A * D L C L R L R E P H L G G P S G H G L E T C V L E D F G S P I W V D R V D M G L R P V S . . . . . . 18300852 acactgactcttctgtcactcccagcgtagacagcagcatcgtcctcacagcagcctctg T L T L L S L P A * T A A S S S Q Q P L H * L F C H S Q R R Q Q H R P H S S L C Y T D S S V T P S V D S S I V L T A A S . . . . . . 18300792 tgcagagcatgccagacactgaggagagcaggctttacggggatgacgctacatatttgg C R A C Q T L R R A G F T G M T L H I W A E H A R H * G E Q A L R G * R Y I F G V Q S M P D T E E S R L Y G D D A T Y L . . . . . . 18300732 ctgagggaggcaggaggcagcattcctatacatccaatgggcccactttcatggagacgg L R E A G G S I P I H P M G P L S W R R * G R Q E A A F L Y I Q W A H F H G D G A E G G R R Q H S Y T S N G P T F M E T . . . . . . 18300672 cgagctttaagaagaaacgctccaaatctgcagacatctggcgggaggacagcctggaat R A L R R N A P N L Q T S G G R T A W N E L * E E T L Q I C R H L A G G Q P G I A S F K K K R S K S A D I W R E D S L E . . . . . . 18300612 tctcactctctgatctgagccaagaacatttaacaagcaacgaagaaatcttgggttccg S H S L I * A K N I * Q A T K K S W V P L T L * S E P R T F N K Q R R N L G F R F S L S D L S Q E H L T S N E E I L G S . . . . . . 18300552 ccgaagagaaggactgcgaggaggctcgggggatggaaacgcgggcgagtccgcggcagc P K R R T A R R L G G W K R G R V R G S R R E G L R G G S G D G N A G E S A A A A E E K D C E E A R G M E T R A S P R Q . . . . . . 18300492 tcagcacctgtcagagagccaattccttgggtgacttgtatgctcagaaaaactctggag S A P V R E P I P W V T C M L R K T L E Q H L S E S Q F L G * L V C S E K L W S L S T C Q R A N S L G D L Y A Q K N S G . . . . . . 18300432 tgacagcaaacggggggccggggagcaaatttgcaggctactgtcggaatttggtgtctg * Q Q T G G R G A N L Q A T V G I W C L D S K R G A G E Q I C R L L S E F G V * V T A N G G P G S K F A G Y C R N L V S . . . . . . 18300372 atattcccaatcttgcaaaccataagatgccaccagctgctgctgaagagactcctccgt I F P I L Q T I R C H Q L L L K R L L R Y S Q S C K P * D A T S C C * R D S S V D I P N L A N H K M P P A A A E E T P P . . . . . . 18300312 acagtaattataacacacttccctgtaggaaatctcactgtctctctgaaggtgccacca T V I I T H F P V G N L T V S L K V P P Q * L * H T S L * E I S L S L * R C H Q Y S N Y N T L P C R K S H C L S E G A T . . . . . . : 18300252 acccacaaattagccatagcaacagcatgcaaggcagaagagctaaaacaactcag : gatg T H K L A I A T A C K A E E L K Q L R : M P T N * P * Q Q H A R Q K S * N N S : G C N P Q I S H S N S M Q G R R A K T T Q : D . . . . . . 18286372 ttaatgcaggcgagggcagtgagtttgcagacagtgggattgaaggggccactaccgaca L M Q A R A V S L Q T V G L K G P L P T * C R R G Q * V C R Q W D * R G H Y R H V N A G E G S E F A D S G I E G A T T D . . . . . . 18286312 cggacctcctgtccaggcgatctaatgccaccaactccagctactcacccaccacaggcc R T S C P G D L M P P T P A T H P P Q A G P P V Q A I * C H Q L Q L L T H H R P T D L L S R R S N A T N S S Y S P T T G . . . . . . 18286252 gggcctttgtgggcagcgacagcggcagcagctccaccggggatgcggctcgtcaggggg G P L W A A T A A A A P P G M R L V R G G L C G Q R Q R Q Q L H R G C G S S G G R A F V G S D S G S S S T G D A A R Q G . . . . . . 18286192 tgtacgagaacttccggcgggagctggagatgagcaccaccaacagcgagagcctggagg C T R T S G G S W R * A P P T A R A W R V R E L P A G A G D E H H Q Q R E P G G V Y E N F R R E L E M S T T N S E S L E . . . . . . 18286132 aggccggctcggcgcacagcgatgagcagagcagcggcaccctgagctctccgggccagt R P A R R T A M S R A A A P * A L R A S G R L G A Q R * A E Q R H P E L S G P V E A G S A H S D E Q S S G T L S S P G Q . . . . . . 18286072 cggacatcctgctgaccgccgcacagggcacggtgcgcaaggccggcgccctggccgtca R T S C * P P H R A R C A R P A P W P S G H P A D R R T G H G A Q G R R P G R Q S D I L L T A A Q G T V R K A G A L A V . . . . . . 18286012 agaacttcctggtgcacaagaagaacaagaaggtggagtcagccacccggaggaagtgga R T S W C T R R T R R W S Q P P G G S G E L P G A Q E E Q E G G V S H P E E V E K N F L V H K K N K K V E S A T R R K W . . . : . . . 18285952 agcactactgggtgtccctgaaag : gatgcacgctatttttctacgagagcgacggcaggt S T T G C P * K : D A R Y F S T R A T A G A L L G V P E R : M H A I F L R E R R Q V K H Y W V S L K : G C T L F F Y E S D G R . . . . . . 18279811 ctgggatagaccacaacagcatccccaaacacgccgtctgggtggagaacagcattgtgc L G * T T T A S P N T P S G W R T A L C W D R P Q Q H P Q T R R L G G E Q H C A S G I D H N S I P K H A V W V E N S I V . . . . . . 18279751 aggcggtgcctgagcaccccaagaaggactttgtcttctgcctcagcaattccctgggtg R R C L S T P R R T L S S A S A I P W V G G A * A P Q E G L C L L P Q Q F P G * Q A V P E H P K K D F V F C L S N S L G . . : . . . . 18279691 atgccttcctttttcag : accactagccagacggagcttgaaaactggatcaccgccatcc M P S F F R : P L A R R S L K T G S P P S C L P F S : D H * P D G A * K L D H R H P D A F L F Q : T T S Q T E L E N W I T A I . . . . . . 18260094 actctgcctgcgccactgcggtcgcgaggcaccaccacaaggaagacacgctccgactcc T L P A P L R S R G T T T R K T R S D S L C L R H C G R E A P P Q G R H A P T P H S A C A T A V A R H H H K E D T L R L . . . . . . 18260034 tgaaatcagagatcaaaaaactggaacagaagattgacatggatgaaaagatgaagaaaa * N Q R S K N W N R R L T W M K R * R K E I R D Q K T G T E D * H G * K D E E N L K S E I K K L E Q K I D M D E K M K K . . . . . . 18259974 tgggtgaaatgcagctgtcttcagtcactgactcaaagaaaaagaaaacaatattagatc W V K C S C L Q S L T Q R K R K Q Y * I G * N A A V F S H * L K E K E N N I R S M G E M Q L S S V T D S K K K K T I L D . : . . . . . 18259914 ag : atctttgtctgggagcaaaatctcgagcagttccaaatggacctgtttcgtttccgct R : S L S G S K I S S S S K W T C F V S A : D L C L G A K S R A V P N G P V S F P L Q : I F V W E Q N L E Q F Q M D L F R F R . . . . . . 18257720 gttatttagccagccttcagggtggggagctgccaaaccccaaaaggcttctcgcttttg V I * P A F R V G S C Q T P K G F S L L L F S Q P S G W G A A K P Q K A S R F C C Y L A S L Q G G E L P N P K R L L A F . . . . . . 18257660 caagtcgaccaacgaaagtggccatgggccgccttggaatcttttcggtatcatcgtttc Q V D Q R K W P W A A L E S F R Y H R F K S T N E S G H G P P W N L F G I I V S A S R P T K V A M G R L G I F S V S S F . : . . . . . 18257600 atgccctg : gtggcagcacgcactggtgaaactggagtgagaagacgtactcaggccatgt M P W : W Q H A L V K L E * E D V L R P C C P : G G S T H W * N W S E K T Y S G H V H A L : V A A R T G E T G V R R R T Q A M . . . . . . 18251834 ccagatccgcgagcaagcgaaggagcaggttttcttctctgtggggtctggatactacct P D P R A S E G A G F L L C G V W I L P Q I R E Q A K E Q V F F S V G S G Y Y L S R S A S K R R S R F S S L W G L D T T . . . . : . . 18251774 ccaaaaagaagcagggacggccaagcatcaatcag : gtgtttggagagggaaccgaagctg P K R S R D G Q A S I R : C L E R E P K L Q K E A G T A K H Q S : G V W R G N R S C S K K K Q G R P S I N Q : V F G E G T E A . . . . . : . 18247634 taaagaaatctttagagggaatatttgatgacattgttccagatggcaag : agggagaaag * R N L * R E Y L M T L F Q M A R : G R K K E I F R G N I * * H C S R W Q : E G E R V K K S L E G I F D D I V P D G K : R E K . . . . . . 18244392 aagtggtcttacctaacgttcaccagcacaaccctgactgcgacatttgggtccacgagt K W S Y L T F T S T T L T A T F G S T S S G L T * R S P A Q P * L R H L G P R V E V V L P N V H Q H N P D C D I W V H E . . . . . . 18244332 atttcactccatcctggttctgtctgcccaataatcagcctgccctgacggtcgtccggc I S L H P G S V C P I I S L P * R S S G F H S I L V L S A Q * S A C P D G R P A Y F T P S W F C L P N N Q P A L T V V R . . . . . : . 18244272 caggcgacactgcacgggacaccctggagctgatttgcaag : acacatcaactggatcatt Q A T L H G T P W S * F A R : H I N W I I R R H C T G H P G A D L Q : D T S T G S F P G D T A R D T L E L I C K : T H Q L D H . . . . . . 18237180 ctgctcattacctgcgcctgaaatttctaatagaaaacaaaatgcagctctatgttccac L L I T C A * N F * * K T K C S S M F H C S L P A P E I S N R K Q N A A L C S T S A H Y L R L K F L I E N K M Q L Y V P . . . : . . . 18237120 agcccgaggaagacatctatgagctg : ctgtacaaagaaattgaaatctgtccaaaagtca S P R K T S M S C : C T K K L K S V Q K S A R G R H L * A : A V Q R N * N L S K S H Q P E E D I Y E L : L Y K E I E I C P K V . . . . . : . 18229458 ctcagagcatccacattgagaagtcagatacagctgctgatacttacg : ggttttcacttt L R A S T L R S Q I Q L L I L T : G F H F S E H P H * E V R Y S C * Y L R : V F T F T Q S I H I E K S D T A A D T Y : G F S L . . . . . . 18221262 cttctgtggaagaagatggtattcgaaggctgtacgtgaatagtgtgaaggaaaccggtt L L W K K M V F E G C T * I V * R K P V F C G R R W Y S K A V R E * C E G N R F S S V E E D G I R R L Y V N S V K E T G . . : . . . . 18221202 tagcttccaagaaag : gcctgaaagcaggagatgagattcttgagatcaataatcgtgctg * L P R K : A * K Q E M R F L R S I I V L S F Q E R : P E S R R * D S * D Q * S C C L A S K K : G L K A G D E I L E I N N R A . . . . . . 18216788 ctgacgccctgaactcttctatgctcaaagatttcctctcacagccctcgctgggcctcc L T P * T L L C S K I S S H S P R W A S * R P E L F Y A Q R F P L T A L A G P P A D A L N S S M L K D F L S Q P S L G L . . . . . . 18216728 tggtgaggacctaccccgagctggaggaaggagtggagctgctggaaagcccgccccacc W * G P T P S W R K E W S C W K A R P T G E D L P R A G G R S G A A G K P A P P L V R T Y P E L E E G V E L L E S P P H . . . . . . : 18216668 gagtggacggccctgccgaccttggcgagagccccctcgcctttctcaccagcaacccag : E W T A L P T L A R A P S P F S P A T Q : S G R P C R P W R E P P R L S H Q Q P R : R V D G P A D L G E S P L A F L T S N P : . . . . . . 18199253 ggcacagcctttgcagcgagcagggcagcagtgctgagaccgctccagaggagaccgagg G T A F A A S R A A V L R P L Q R R P R A Q P L Q R A G Q Q C * D R S R G D R G G H S L C S E Q G S S A E T A P E E T E . . . . . : . 18199193 ggccagacttggaatcctcagatgagactgatcacagcagcaag : agtacagaacaggtgg G Q T W N P Q M R L I T A A R : V Q N R W A R L G I L R * D * S Q Q Q : E Y R T G G G P D L E S S D E T D H S S K : S T E Q V . . . . . . 18188599 ccgcattttgccgcagtttgcatgagatgaacccctctgaccagagcccatctcctcagg P H F A A V C M R * T P L T R A H L L R R I L P Q F A * D E P L * P E P I S S G A A F C R S L H E M N P S D Q S P S P Q . . . . . . 18188539 actccacggggcctcagctggcgaccatgagacaactctcggatgcagataagctgcgca T P R G L S W R P * D N S R M Q I S C A L H G A S A G D H E T T L G C R * A A Q D S T G P Q L A T M R Q L S D A D K L R . . . . . : . 18188479 aggtgatctgcgagctcctggagacggagcgcacctacgtgaag : gatttaaactgtctta R * S A S S W R R S A P T * R : I * T V L G D L R A P G D G A H L R E : G F K L S Y K V I C E L L E T E R T Y V K : D L N C L . . . . . . : 18187307 tggagagatacctaaagcctcttcaaaaagaaacttttctcacccaggatgag : cttgacg W R D T * S L F K K K L F S P R M S : L T G E I P K A S S K R N F S H P G * : A * R M E R Y L K P L Q K E T F L T Q D E : L D . . . . . . 18186943 tgctttttggaaatttaacggaaatggtagagtttcaagtagaattccttaaaactctag C F L E I * R K W * S F K * N S L K L * A F W K F N G N G R V S S R I P * N S R V L F G N L T E M V E F Q V E F L K T L . . . . . . : 18186883 aagatggagtgagactggtacctgatttggaaaagcttgagaaggttgatcaatttaag : a K M E * D W Y L I W K S L R R L I N L R : R W S E T G T * F G K A * E G * S I * : E E D G V R L V P D L E K L E K V D Q F K : . . . . . . 18181191 aagtgctgttctctctggggggatcattcctgtattatgctgaccgcttcaagctctaca K C C S L W G D H S C I M L T A S S S T S A V L S G G I I P V L C * P L Q A L Q K V L F S L G G S F L Y Y A D R F K L Y . . . . . : . 18181131 gtgccttctgcgccagccacacaaaagttcccaaggtcctggtgaaag : ccaagacagaca V P S A P A T Q K F P R S W * K : P R Q T C L L R Q P H K S S Q G P G E S : Q D R H S A F C A S H T K V P K V L V K : A K T D . . . . . . 18175681 cggctttcaaggcattcttggatgcccagaacccgaagcagcagcactcatccacgctgg R L S R H S W M P R T R S S S T H P R W G F Q G I L G C P E P E A A A L I H A G T A F K A F L D A Q N P K Q Q H S S T L . . . . . . 18175621 agtcgtacctcatcaagcccatccagaggatcctcaagtacccacttctgctcagggagc S R T S S S P S R G S S S T H F C S G S V V P H Q A H P E D P Q V P T S A Q G A E S Y L I K P I Q R I L K Y P L L L R E . . . . . : . 18175561 tgttcgccctgaccgatgcggagagcgaggagcactaccacctggacg : tggccatcaaga C S P * P M R R A R S T T T W T : W P S R V R P D R C G E R G A L P P G R : G H Q D L F A L T D A E S E E H Y H L D : V A I K . . . . . . 18175413 ccatgaacaaggttgccagtcacatcaatgagatgcagaaaatccatgaagagtttgggg P * T R L P V T S M R C R K S M K S L G H E Q G C Q S H Q * D A E N P * R V W G T M N K V A S H I N E M Q K I H E E F G . . . . . : . 18175353 ctgtgtttgaccagctgattgctgaacagactggtgagaaaaaagag : gttgcagatctga L C L T S * L L N R L V R K K R : L Q I * C V * P A D C * T D W * E K R : G C R S E A V F D Q L I A E Q T G E K K E : V A D L . . . . . . 18170217 gcatgggagacctgcttttgcacactaccgtgatctggctgaacccgccggcctcgctgg A W E T C F C T L P * S G * T R R P R W H G R P A F A H Y R D L A E P A G L A G S M G D L L L H T T V I W L N P P A S L . . . . : . . 18170157 gcaagtggaaaaaggaaccagagttggcagcattcg : tcttcaaaactgctgtggtccttg A S G K R N Q S W Q H S : S S K L L W S L Q V E K G T R V G S I R : L Q N C C G P C G K W K K E P E L A A F : V F K T A V V L . . . . : . . 18165113 tgtataaagatggttccaaacagaagaagaaactt : gtaggatctcacaggctttccattt C I K M V P N R R R N L : * D L T G F P F V * R W F Q T E E E T : C R I S Q A F H L V Y K D G S K Q K K K L : V G S H R L S I . . . . . . 18164479 atgaggactgggaccccttcagatttcgacacatgatccccacggaagcgctgcaggttc M R T G T P S D F D T * S P R K R C R F * G L G P L Q I S T H D P H G S A A G S Y E D W D P F R F R H M I P T E A L Q V . . : . . . . 18164419 gagctttggcgagtgcag : atgcagaggcaaatgccgtgtgtgaaattgtccatgtaaaat E L W R V Q : M Q R Q M P C V K L S M * N S F G E C R : C R G K C R V * N C P C K I R A L A S A : D A E A N A V C E I V H V K . . . . . : . 18161299 ccgagtctgaagggaggccggagagggtctttcacttgtgctgcag : ctccccagagagcc P S L K G G R R G S F T C A A : A P Q R A R V * R E A G E G L S L V L Q : L P R E P S E S E G R P E R V F H L C C S : S P E S . . . . . . 18158869 gaaaggatttcctaaaggctgtgcattcaatcctgcgtgataagcacagaagacagctcc E R I S * R L C I Q S C V I S T E D S S K G F P K G C A F N P A * * A Q K T A P R K D F L K A V H S I L R D K H R R Q L . . . . . . 18158809 tcaaaaccgagagccttccctcatcccagcaatatgtcccttttggaggcaaaagattgt S K P R A F P H P S N M S L L E A K D C Q N R E P S L I P A I C P F W R Q K I V L K T E S L P S S Q Q Y V P F G G K R L . . . . : . . 18158749 gtgcactgaagggggccaggccggccatgagcagggcag : tgtctgccccaagcaagtctc V H * R G P G R P * A G Q : C L P Q A S L C T E G G Q A G H E Q G S : V C P K Q V S C A L K G A R P A M S R A : V S A P S K S . . . . . . 18155005 ttgggaggaggaggcggcggctggctcgaaacaggtttaccattgattctgatgccgtct L G G G G G G W L E T G L P L I L M P S W E E E A A A G S K Q V Y H * F * C R L L G R R R R R L A R N R F T I D S D A V . . . . . . 18154945 ccgcaagcagcccggagaaagagtcccagcagccccccggtggtggggacactgaccgat P Q A A R R K S P S S P P V V G T L T D R K Q P G E R V P A A P R W W G H * P M S A S S P E K E S Q Q P P G G G D T D R . . . . . . 18154885 gggtagaggagcagtttgatcttgctcagtatgaggagcaagatgacatcaaggagacag G * R S S L I L L S M R S K M T S R R Q G R G A V * S C S V * G A R * H Q G D R W V E E Q F D L A Q Y E E Q D D I K E T . . . . . . 18154825 acatcctcagtgacgatgatgagttctgtgagtccgtgaagggtgcctcagtggacagag T S S V T M M S S V S P * R V P Q W T E H P Q * R * * V L * V R E G C L S G Q R D I L S D D D E F C E S V K G A S V D R . . . . . . 18154765 acctgcaggagcggcttcaggccacctccatcagtcagcgggaaagaggccggaaaaccc T C R S G F R P P P S V S G K E A G K P P A G A A S G H L H Q S A G K R P E N P D L Q E R L Q A T S I S Q R E R G R K T . . . . . . 18154705 tggatagtcacgcgtcccgcatggcacagctcaagaagcaagctgccctgtcggggatca W I V T R P A W H S S R S K L P C R G S G * S R V P H G T A Q E A S C P V G D Q L D S H A S R M A Q L K K Q A A L S G I . . . . . . 18154645 atggaggcctggagagcgcaagcgaggaagtcatttgggttaggcgtgaagactttgccc M E A W R A Q A R K S F G L G V K T L P W R P G E R K R G S H L G * A * R L C P N G G L E S A S E E V I W V R R E D F A . . . . . . 18154585 cctccaggaaactgaacactgagatctgactgcgtcacctgccccgtagagaatgtgtgt P P G N * T L R S D C V T C P V E N V C L Q E T E H * D L T A S P A P * R M C V P S R K L N T E I * L R H L P R R E C V . . . . . . 18154525 agatacttcctgccctaactctgcccaccctcctgtaccgtcgacaagaatgtcccctta R Y F L P * L C P P S C T V D K N V P L D T S C P N S A H P P V P S T R M S P * * I L P A L T L P T L L Y R R Q E C P L . . . . . . 18154465 ggtcgcgctcttgcacacacggttttggcagctgacttggttctgaagccatgtagccac G R A L A H T V L A A D L V L K P C S H V A L L H T R F W Q L T W F * S H V A T R S R S C T H G F G S * L G S E A M * P . . . . . . 18154405 ccaactttgtcattttcaacaacatcagaaagaattgatcagaatcccaaataa P T L S F S T T S E R I D Q N P K * Q L C H F Q Q H Q K E L I R I P N P N F V I F N N I R K N * S E S Q I Maximal non-overlapping open reading frames (>= 64 codons) >NT_011512-_PGL-1_AGS-1_PPS_1 (18310919 18300197,18286376 18285929,18279847 18279675,18260137 18259913,18257778 18257593,18251886 18251740,18247659 18247585,18244402 18244232,18237199 18237095,18229492 18229411,18221274 18221188,18216833 18216609,18199253 18199150,18188615 18188436,18187323 18187255,18186950 18186825,18181192 18181084,18175693 18175514,18175425 18175307,18170230 18170122,18165137 18165079,18164504 18164402,18161341 18161254,18158883 18158711,18155026 18154557) (frame '2'; 4785 bp, 1595 residues) 1 DHKTMGNAES QHVEHEFYGE KHASLGRKHT SRSLRLSHKT RRTRHASSGK VIHRNSEVST 61 RSSSTPSIPQ SLAENGLEPF SQDGTLEDFG SPIWVDRVDM GLRPVSYTDS SVTPSVDSSI 121 VLTAASVQSM PDTEESRLYG DDATYLAEGG RRQHSYTSNG PTFMETASFK KKRSKSADIW 181 REDSLEFSLS DLSQEHLTSN EEILGSAEEK DCEEARGMET RASPRQLSTC QRANSLGDLY 241 AQKNSGVTAN GGPGSKFAGY CRNLVSDIPN LANHKMPPAA AEETPPYSNY NTLPCRKSHC 301 LSEGATNPQI SHSNSMQGRR AKTTQDVNAG EGSEFADSGI EGATTDTDLL SRRSNATNSS 361 YSPTTGRAFV GSDSGSSSTG DAARQGVYEN FRRELEMSTT NSESLEEAGS AHSDEQSSGT 421 LSSPGQSDIL LTAAQGTVRK AGALAVKNFL VHKKNKKVES ATRRKWKHYW VSLKGCTLFF 481 YESDGRSGID HNSIPKHAVW VENSIVQAVP EHPKKDFVFC LSNSLGDAFL FQTTSQTELE 541 NWITAIHSAC ATAVARHHHK EDTLRLLKSE IKKLEQKIDM DEKMKKMGEM QLSSVTDSKK 601 KKTILDQIFV WEQNLEQFQM DLFRFRCYLA SLQGGELPNP KRLLAFASRP TKVAMGRLGI 661 FSVSSFHALV AARTGETGVR RRTQAMSRSA SKRRSRFSSL WGLDTTSKKK QGRPSINQVF 721 GEGTEAVKKS LEGIFDDIVP DGKREKEVVL PNVHQHNPDC DIWVHEYFTP SWFCLPNNQP 781 ALTVVRPGDT ARDTLELICK THQLDHSAHY LRLKFLIENK MQLYVPQPEE DIYELLYKEI 841 EICPKVTQSI HIEKSDTAAD TYGFSLSSVE EDGIRRLYVN SVKETGLASK KGLKAGDEIL 901 EINNRAADAL NSSMLKDFLS QPSLGLLVRT YPELEEGVEL LESPPHRVDG PADLGESPLA 961 FLTSNPGHSL CSEQGSSAET APEETEGPDL ESSDETDHSS KSTEQVAAFC RSLHEMNPSD 1021 QSPSPQDSTG PQLATMRQLS DADKLRKVIC ELLETERTYV KDLNCLMERY LKPLQKETFL 1081 TQDELDVLFG NLTEMVEFQV EFLKTLEDGV RLVPDLEKLE KVDQFKKVLF SLGGSFLYYA 1141 DRFKLYSAFC ASHTKVPKVL VKAKTDTAFK AFLDAQNPKQ QHSSTLESYL IKPIQRILKY 1201 PLLLRELFAL TDAESEEHYH LDVAIKTMNK VASHINEMQK IHEEFGAVFD QLIAEQTGEK 1261 KEVADLSMGD LLLHTTVIWL NPPASLGKWK KEPELAAFVF KTAVVLVYKD GSKQKKKLVG 1321 SHRLSIYEDW DPFRFRHMIP TEALQVRALA SADAEANAVC EIVHVKSESE GRPERVFHLC 1381 CSSPESRKDF LKAVHSILRD KHRRQLLKTE SLPSSQQYVP FGGKRLCALK GARPAMSRAV 1441 SAPSKSLGRR RRRLARNRFT IDSDAVSASS PEKESQQPPG GGDTDRWVEE QFDLAQYEEQ 1501 DDIKETDILS DDDEFCESVK GASVDRDLQE RLQATSISQR ERGRKTLDSH ASRMAQLKKQ 1561 AALSGINGGL ESASEEVIWV RREDFAPSRK LNTEI* $ memory statistics: $ 2660 bytes spliced alignments in total $ 1 spliced alignments have been stored $ 2660 bytes was the average size of a spliced alignment $ 3056 bytes predicted gene locations in total $ 1 predicted gene locations have been stored $ 3056 bytes was the average size of a predicted gene location $ 24 megabytes was the average size of the backtrace matrix $ 1 backtrace matrix has been allocated