(OSchr10-v3-) exceeds the maximal gDNA length set (15000). The matching EST is 37988995+ (length: 3038). The predicted gene may contain long introns. The program will attempt a spliced alignment in the central 15000 window of the potential gene segment. This may miss a significant alignment or display only part of a significant alignment. ******************************************************************************** EST sequence 154 +strand 3038 n (File: 37988995+) --sequence omitted for brevity-- Predicted gene structure (within gDNA segment 494271 to 479272): Exon 1 494239 494160 ( 80 n); cDNA 710 789 ( 80 n); score: 0.975 Intron 1 494159 491180 (2980 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 2 491179 491169 ( 11 n); cDNA 790 800 ( 11 n); score: 1.000 Intron 2 491168 491056 ( 113 n); Pd: 0.932 (s: 0), Pa: 0.545 (s: 0.96) Exon 3 491055 490904 ( 152 n); cDNA 801 952 ( 152 n); score: 0.980 Intron 3 490903 481471 (9433 n); Pd: 0.999 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 481470 481320 ( 151 n); cDNA 953 1103 ( 151 n); score: 0.987 Intron 4 481319 481229 ( 91 n); Pd: 0.998 (s: 0.96), Pa: 0.996 (s: 1.00) Exon 5 481228 480870 ( 359 n); cDNA 1104 1462 ( 359 n); score: 0.983 Intron 5 480869 480848 ( 22 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 1.00) Exon 6 480847 480759 ( 89 n); cDNA 1463 1551 ( 89 n); score: 0.989 Intron 6 480758 480606 ( 153 n); Pd: 0.968 (s: 0.98), Pa: 0.000 (s: 1.00) Exon 7 480605 480446 ( 160 n); cDNA 1552 1711 ( 160 n); score: 0.894 Intron 7 480445 480385 ( 61 n); Pd: 0.000 (s: 0.70), Pa: 0.580 (s: 0.78) Exon 8 480384 480323 ( 62 n); cDNA 1712 1767 ( 56 n); score: 0.823 Intron 8 480322 480219 ( 104 n); Pd: 0.966 (s: 0.88), Pa: 0.851 (s: 0.98) Exon 9 480218 480098 ( 121 n); cDNA 1768 1888 ( 121 n); score: 0.992 Intron 9 480097 480004 ( 94 n); Pd: 0.984 (s: 1.00), Pa: 0.985 (s: 0.98) Exon 10 480003 479849 ( 155 n); cDNA 1889 2043 ( 155 n); score: 0.955 Intron 10 479848 479763 ( 86 n); Pd: 0.952 (s: 0.92), Pa: 0.998 (s: 0.96) Exon 11 479762 479272 ( 491 n); cDNA 2044 2534 ( 491 n); score: 0.974 MATCH OSchr10-v3- 37988995+ 0.965 1831 0.603 C PGS_OSchr10-v3-_37988995+ (494239 494160,491179 491169,491055 490904,481470 481320,481228 480870,480847 480759,480605 480446,480384 480323,480218 480098,480003 479849,479762 479272) Alignment (genomic DNA sequence = upper lines): GGGAGAAGAT CTGCATGGGT TGCATCGGAG CTTCAAAGGT TCTTAATTAC TTTTAGTTAG 494180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GGGAGAAGAT CTGCATGGGT TGCATCGGAG CTTCAAAGGT TCTTAATTAC TTTTAGTCAG 769 ACGTGCAAGA GCTGCTGGAA ATATGTCACG CCCGAAAATT CACTAGTAAT TTTCGAACTT 494120 || ||||||| |||||||||| ACATGCAAGA GCTGCTGGAA .......... .......... .......... .......... 789 ATTTGTGCAT AAAACTCTCA TCCAGGAATT AGCCGAAGTA CACAAACTGA CAATTCAATA 494060 .......... .......... .......... .......... .......... .......... 789 --sequence omitted for brevity-- TCTAATAATG ATTTATTAAA TAATTTATAA ATCCTAAGAC GAAAATCAGG ATGTGACAAA 491180 .......... .......... .......... .......... .......... .......... 789 ATACTTGGCA GGTAATTTCA GTTCATCCTT CTGTTCAGTC TGGCATTTCT CTGAGGAGTT 491120 |||||||||| | ATACTTGGCA G......... .......... .......... .......... .......... 800 CTTCTACTGT TACGCGTTAG ATTTAAACTT GCTAGTGTCT AACCATGATG TTTGTACCAT 491060 .......... .......... .......... .......... .......... .......... 800 GCAGCTCTGG TTGTTTATTC GCTCAAGATA GTGTTGGTTA ACTTTCCTTG CTGCGAAGCT 491000 |||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| ....CTCTGG TTGTTTATTC GCTCAAGATA GTGTTGGTTC TCTTTCCTTG CTGCGAAGCT 856 TGCTGTTTCA GTCTATTGTT TAATTAGGGG TTGATATTGC TCTTGTTTCC CTGCCTTTTC 490940 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TGCTGTTTCA GTCTATTGTT TAATTAGGGG TTGATATTGC TCTGGTTTCC CTGCCTTTTC 916 CCCTTCCTGT CAGTTCGGTC TGCCTTTGTG CTGAAGGTAT TTTCTTCTTC TTTATTGTTA 490880 |||||||||| |||||||||| |||||||||| |||||| CCCTTCCTGT CAGTTCGGTC TGCCTTTGTG CTGAAG.... .......... .......... 952 TACATTACTA TATTTCTCTG GTTGTTTAAT TCTTTGCATG ATATTATATG GTATATGTGT 490820 .......... .......... .......... .......... .......... .......... 952 --sequence omitted for brevity-- ATGATTTGTC CGCTGCAGTT ATATGTACTG TTCTTCTTAG TAACATTTCC TTGTACATAT 481520 .......... .......... .......... .......... .......... .......... 952 ATAGTAGTGT TGTTTTGTCT ATACTAAAAG TATTTTGTGC TTATTGCAGA TTCCATATGG 481460 | |||||||||| .......... .......... .......... .......... .........A TTCCATATGG 963 CGCATGTACT GATTTCACAG CTATCGTTTG GAGATTCAAA CAAAAGAATC CTTGCAAGGG 481400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCATGTACT GATTTCACAG CTATCGTTTG GAGATTCAAA CAAAAGAATC CTTGCAAGGG 1023 TCTCCAGGCT ATGGAACTTT ACTGATCTCA ACGATGATAC AAAAATTTTC CACACTGATC 481340 |||||||||| |||||||||| |||||||||| || || |||| |||||||||| |||||||||| TCTCCAGGCT ATGGAACTTT ACTGATCTCA ACAATCATAC AAAAATTTTC CACACTGATC 1083 TTGTCTTACT CGATGAAATG GTAATAATTT ACGTGCCAAA TCCATTTTCT ATATTTTCCT 481280 |||||||||| |||||||||| TTGTCTTACT CGATGAAATG .......... .......... .......... .......... 1103 TTCTATACCG ATAATTCTCT TGATAACATG ATTTGTATTT ATAATCTGCA GGGGACTAGC 481220 ||||||||| .......... .......... .......... .......... .......... .GGGACTAGC 1112 ATACATGCCC AAATTTACCC CCCTATAACA GAAAAGATGA AACCTCTCCT TAAGGAAGAA 481160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACATGCCC AAATTTACCC CCCTATAACA GAAAAGATGA AACCTCTCCT TAAGGAAGAA 1172 AAGGTTTACT ACATTGACTC ATTCACTGTT AGGGCTGCAA ACAGAACATA CAGGCTAGTT 481100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AAGGTTTACT ACATTGACTC ATTCACTGTT AGGGCTGCAA ACAGAACATA CAGGCCAGTT 1232 GCAAACAACC TAATGATCCT CTTCAGTAAA TGGACAACAC TTGAAGAACA CATTAATGTC 481040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAACAACC TAATGATCCT CTTCAGTAAA TGGACAACAC TTGAAGAACA CATTAATGTC 1292 CCTCCTCATT TCCCTGGTAT TACATTTTCA CTGACACCAT TCGAAGATGT TCCTTCCCTT 480980 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCTCATT TCCCTGGTAT TACATTTTCA CTGACACCAT TCGAAGATGT TCCTTCCCTT 1352 GTCGAGAAAA AATCATTCTA CGTTGGTAAT AACATACTTT TATTGTGTTG CAATTATTGT 480920 |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| |||||||||| GTCGAGAAAA ATTCATTCTA CGTTGGTAAT AACATACTTT TATTGTGTTA CAATTATTGT 1412 TATATACATC TTTTGCAATG CCATATCATT TTATTAAATT TATATGCAAT GCAAACAGAC 480860 |||||||||| || ||||||| |||||||||| |||||||| | ||||||| || TATATACATC TTCTGCAATG CCATATCATT TTATTAAACT TATATGCCAT .......... 1462 ATTATGGGTG TGATCACTGA AGTTGGTGCA GTCACTACTA TACGTCCTAA GTCCAGAAAC 480800 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ATCACTGA AGTTGGTGCA GTCACTACTA TACGTCCTAA GTCCAGAAAC 1510 GCTAAGAGCT TAAAAAGGAC ATTACAGATC CGCGATGCAA GGCTAGTTTA GTACAACTAA 480740 ||| |||||| |||||||||| |||||||||| |||||||||| | GCTGAGAGCT TAAAAAGGAC ATTACAGATC CGCGATGCAA G......... .......... 1551 ATATTTACAT ATTTATTATT TACTTAATCT TTTTCGCTAG CATTCACACA AACTATCTCA 480680 .......... .......... .......... .......... .......... .......... 1551 CATATTCTTA ACACTAAGTC ATCTCTTCCA ATTAAAATTA AATCACTTTT TCCCCTCCAA 480620 .......... .......... .......... .......... .......... .......... 1551 ATCTACAAAA CTAGCAATTC AACTCTTCCT GTCACACTCT GGGGAGAAAG AGCAACCTCT 480560 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....CAATTC AACTCTTCCT GTCACACTCT GGGGAGAAAG AGCAACCTCT 1597 TTTGATGCTG ATGACATATA CAATGCTGGT CAAACTCAAG CTCAAGTTGC TGTGTTTGTT 480500 ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTTGATGCTA ATGACATATA CAATGCTGGT CAAACTCAAG CTCAAGTTGT TGTGTTTGTT 1657 GGAACACTTG TGAAAGATTA TAGAGGATTA GGTACATTTC TTTCTAAACT TTCAATTACT 480440 |||||||||| |||||||||| ||||||||| || | | || | ||| GGAACACTTG TGAAAGATTA CAGAGGATTA GGCCTTACAC TAACTGGAAG CTCA...... 1711 GTAGTATTGA CTACATGCAA CTAACAATAT CTAATAATTT CCTCCACATA TATAGGCCTT 480380 || | .......... .......... .......... .......... .......... .....-CCAT 1715 ACACTAACTG GAAGCTTACC ATCTAAATAT TCCTGAAGTA GCAGAACTAA ATGAGAGGTA 480320 || || || | | ||| |||||||||| |||||||||| |||||||||| ||||||| GCA--AA-TG GTATATTA-- ATCTAAATAT TCCTGAAGTA GCAGAACTAA ATGAGAG... 1767 ATTTAATTTA TTTAACGTTA TTCTTACAAT CTATGTGCAT CACTGTATTC TTCAAGGTTT 480260 .......... .......... .......... .......... .......... .......... 1767 TCACAGTATC CATTAATCTA AGATACAATT CTTCTATGTA GCTTTAGCAC AAACTTTCAA 480200 ||||||||| ||||||||| .......... .......... .......... .......... .CTTTAGCAC AAACTTTCAG 1786 CCAATCAAGT GGGTTGATGA GCCTGCTACA GGATACAACC AGGATGTACC AGAAGAAAAG 480140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATCAAGT GGGTTGATGA GCCTGCTACA GGATACAACC AGGATGTACC AGAAGAAAAG 1846 AGTATTGCAG AAATCCTTAA TATCAACCCT CACAAACACA AGGTTGACAC TATCTCTAGA 480080 |||||||||| |||||||||| |||||||||| |||||||||| || AGTATTGCAG AAATCCTTAA TATCAACCCT CACAAACACA AG........ .......... 1888 ACACATCTTA ACTACATCTA TCCACTTTTT GATGATATAA TTACCAATAT GATATTTTCA 480020 .......... .......... .......... .......... .......... .......... 1888 TTGTCTTCTT ATGCAGGGAA CACGTTTTAT AGTAAATGTG ACTGTCAGAA GGATATGTAA 479960 |||| || ||||||| |||||||||| |||||||||| |||||||||| .......... ......GGAA CATGTTTTAT AGTAAATGTG ACTGTCAGAA GGATATGTAA 1932 TGAATATTCT TGGTGGTACA ATTCATGTCG AATATGCTAC AAAACTTCAA AACCATATGG 479900 |||||||||| |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| TGAATATTCT TGGTGGTACA ATTCATGTTG AATGTGCTAC AAAACTTCAA AACCATATGG 1992 CTCTAGCTAC AGATACTCCA GCTGTTCTAG CATCGGAATA ACAGATCCAA GGTTCATAAC 479840 |||||||||| |||| ||||| ||| ||||| |||||||||| ||||||||| | CTCTAGCTAC AGATGCTCCA GCTATTCTAA CATCGGAATA CCAGATCCAA G......... 2043 AGAACACGCT CTGTCCTCTT ACATCTTTAG CAATTATCAT CCACACATTG CTATAGCCAT 479780 .......... .......... .......... .......... .......... .......... 2043 ATCCATTTTT CATGCAGGTA CAAAGTAGTA TTAATTGCCA GCGATGATGA TGCTAATGCT 479720 ||| |||||||||| |||||| || |||||||||| |||||||||| .......... .......GTA CAAAGTAGTA TTAATTTCCG GCGATGATGA TGCTAATGCT 2086 ACATTTATCC TTTTCGGAAG GATCGCACAA CGGCTACTAC GCAGGCCCGT AGAATCTCTC 479660 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ACATTTATCC TTTTCGGAAG GATCGCACAA CGGCTACTAC GCAGGCCCAT AGAATCTCTC 2146 ATTGAAGAAA AACCACCAAA CAGTGAATAC ATTCCAAGTG AAATCACGTC ACTTATTGGT 479600 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTGAAGAAA ATCCACCAAA CAGTGAATAC ATTCCAAGTG AAATCACGTC ACTTATTGGC 2206 AGCAATTTTG CATGGAATGT TAGCTTTACG CGGGATACTG TTATGAGAAG TCAAGAGTGC 479540 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGCAATTTTC CATGGAATGT TAGCTTTACA CGGGATACTG TTATGAGAAG TCAAGAGTGC 2266 CTACAAGTTA ATAGCATTAT ATCCGCTGGT GCTTCAAACC AGCCACTACT CCTTATGTCC 479480 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CTACAAGTTA ATAGCATTAT ATCCGCTGGT GCTTCAAACC AACCACTACT CCTTATGTCC 2326 CCAGATGCTT CACAAGTGAC ATCAGCTATT GTCTCAGCAA GCTCAAGCAG CTCTGTCCAA 479420 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CCAGATGCTT CACAAGTGAC ATCAGCTATT GTCTCAGCAA CCTCAAGCAG CTCTGTCCAA 2386 ACAGCACCAA CACCAAATGA AACAAGCAAT GAATCACAGC AGCCCATTTA ACCAAGACAA 479360 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ACAGCACCAA CACCAAATGA AACAAGCAAT GAATCACAGC AGCCCATTCA ACCAAGACAA 2446 ACCATCTCAA CACCAACCAA GTTCATCATC GCTCAGGGAA CACAGGACAC CCCAACTAGC 479300 |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ACCATCTCAA CACCAACCAA GTTCACTATC GCTCAGGGAA CACAGGACAC CCCAACTAGC 2506 AAATCAAGTT CTTCAGCACC TACCAAGA 479272 |||||||||| ||||| |||| |||||||| AAATCAAGTT CTTCAACACC TACCAAGA 2534 hqPGS_OSchr10-v3-_37988995+ (494239 494160,491179 491169,491055 490904,481470 481320,481228 480870,480847 480759,480605 480446,480384 480323,480218 480098,480003 479849,479762 479272) ********************************************************************************